Ramón Díaz-Uriarte

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 8

Top Topics

Fitness Landscape

Linkage Disequilibrium

Analytical Models

Top Venues

PLoS Comput. Biol.

Publications

Ramón Díaz-Uriarte, Elisa Gómez de Lope, Rosalba Giugno, Holger Fröhlich, Petr V. Nazarov, Isabel A. Nepomuceno-Chamorro, Armin Rauschenberger, Enrico Glaab
Ten quick tips for biomarker discovery and validation analyses using machine learning. PLoS Comput. Biol. 18 (8) (2022)
Ramón Díaz-Uriarte, Pablo Herrera-Nieto
EvAM-Tools: tools for evolutionary accumulation and cancer progression models. Bioinform. 38 (24) (2022)
Juan Diaz-Colunga, Ramón Díaz-Uriarte
Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next? PLoS Comput. Biol. 17 (12) (2021)
Ramón Díaz-Uriarte, Claudia Vasallo
Every which way? On predicting tumor evolution using cancer progression models. PLoS Comput. Biol. 15 (8) (2019)
Sayed-Rzgar Hosseini, Ramón Díaz-Uriarte, Florian Markowetz, Niko Beerenwinkel
Estimating the predictability of cancer evolution. Bioinform. 35 (14) (2019)
Ramón Díaz-Uriarte
Cancer progression models and fitness landscapes: a many-to-many relationship. Bioinform. 34 (5) (2018)
Ramón Díaz-Uriarte
OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations. Bioinform. 33 (12) (2017)
Ramón Díaz-Uriarte
Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling. BMC Bioinform. 16 (2015)
Ramón Díaz-Uriarte
ADaCGH2: parallelized analysis of (big) CNA data. Bioinform. 30 (12) (2014)
Angel Carro, Daniel Rico, Oscar M. Rueda, Ramón Díaz-Uriarte, David G. Pisano
waviCGH: a web application for the analysis and visualization of genomic copy number alterations. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Edward R. Morrissey, Ramón Díaz-Uriarte
Pomelo II: finding differentially expressed genes. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Oscar M. Rueda, Ramón Díaz-Uriarte
RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions. Bioinform. 25 (15) (2009)
Oscar M. Rueda, Ramón Díaz-Uriarte
Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously. BMC Bioinform. 10 (2009)
Andreu Alibés, Andrés Cañada, Ramón Díaz-Uriarte
PaLS: filtering common literature, biological terms and pathway information. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Ramón Díaz-Uriarte
SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data. BMC Bioinform. 9 (2008)
Oscar M. Rueda, Ramón Díaz-Uriarte
A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145. BMC Bioinform. 8 (2007)
Andreu Alibés, Patricio Yankilevich, Andrés Cañada, Ramón Díaz-Uriarte
IDconverter and IDClight: Conversion and annotation of gene and protein IDs. BMC Bioinform. 8 (2007)
Ramón Díaz-Uriarte
GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest. BMC Bioinform. 8 (2007)
Ramón Díaz-Uriarte, Andreu Alibés, Edward R. Morrissey, Andrés Cañada, Oscar M. Rueda, Mariana L. Neves
Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Oscar M. Rueda, Ramón Díaz-Uriarte
Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH. PLoS Comput. Biol. 3 (6) (2007)
Ramón Díaz-Uriarte, Sara Alvarez de Andrés
Gene selection and classification of microarray data using random forest. BMC Bioinform. 7 (2006)
Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo
GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo
Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. Bioinform. 21 (13) (2005)
Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
New challenges in gene expression data analysis and the extended GEPAS. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Ramón Díaz-Uriarte
Variable Selection from Random Forests: Application to Gene Expression Data. Spanish Bioinformatics Conference (2004)
Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
New Challenges in Gene Expression Data Analysis and the Extended GEPAS. Spanish Bioinformatics Conference (2004)
Ramón Díaz-Uriarte, David Casado
Can we Find Molecular Signatures from Gene Expression Data? Spanish Bioinformatics Conference (2004)
Juan M. Vaquerizas, Joaquín Dopazo, Ramón Díaz-Uriarte
DNMAD: web-based diagnosis and normalization for microarray data. Bioinform. 20 (18) (2004)
Fátima Al-Shahrour, Ramón Díaz-Uriarte, Joaquín Dopazo
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinform. 20 (4) (2004)
Javier Herrero, Ramón Díaz-Uriarte, Joaquín Dopazo
Gene expression data preprocessing. Bioinform. 19 (5) (2003)
Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo
GEPAS: a web-based resource for microarray gene expression data analysis. Nucleic Acids Res. 31 (13) (2003)
Fátima Al-Shahrour, Javier Herrero, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
Using gene ontology on genome-scale studies to find significant associations of biologically relevant terms to groups of genes. NNSP (2003)