Juan M. Vaquerizas

Publication Activity (10 Years)

Years Active: 2003-2016
Publications (10 Years): 1

Top Topics

Parameter Identification

Reinforcement Learning

Top Venues

Publications

Kai Kruse, Clemens B. Hug, Benjamín Hernández-Rodríguez, Juan M. Vaquerizas
TADtool: visual parameter identification for TAD-calling algorithms. Bioinform. 32 (20) (2016)
Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo
Next station in microarray data analysis: GEPAS. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo
GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Lucía Conde, Juan M. Vaquerizas, Carles Ferrer-Costa, Xavier de la Cruz, Modesto Orozco, Joaquín Dopazo
PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo
Highly specific and accurate selection of siRNAs for high-throughput functional assays. Bioinform. 21 (8) (2005)
Fátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
New challenges in gene expression data analysis and the extended GEPAS. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo
Highly Specific and Accurate Selection of siRNAs for High-Throughput Functional Assays. Spanish Bioinformatics Conference (2004)
Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo
Finding SNPs with Putative Phenotypic Effect at Transcriptional Level. Spanish Bioinformatics Conference (2004)
Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo
New Challenges in Gene Expression Data Analysis and the Extended GEPAS. Spanish Bioinformatics Conference (2004)
Juan M. Vaquerizas, Joaquín Dopazo, Ramón Díaz-Uriarte
DNMAD: web-based diagnosis and normalization for microarray data. Bioinform. 20 (18) (2004)
Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, Joaquín Dopazo
PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo
GEPAS: a web-based resource for microarray gene expression data analysis. Nucleic Acids Res. 31 (13) (2003)