Joost Schymkowitz

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 11

Top Topics

Protein Structure

Subcellular Localization

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Kobe Janssen, Ramon Duran-Romaña, Guy Bottu, Mainak Guharoy, Alexander Botzki, Frederic Rousseau, Joost Schymkowitz
SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models. BMC Bioinform. 24 (1) (2023)
Daniele Raimondi, Gabriele Orlando, Emiel Michiels, Donya Pakravan, Anna Bratek-Skicki, Ludo Van Den Bosch, Yves Moreau, Frederic Rousseau, Joost Schymkowitz
In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention. Bioinform. 37 (20) (2021)
Reshmi Ramakrishnan, Bert Houben, Lukasz Kreft, Alexander Botzki, Joost Schymkowitz, Frederic Rousseau
Protein Homeostasis Database: protein quality control in E.coli. Bioinform. 36 (3) (2020)
Nikolaos N. Louros, Katerina Konstantoulea, Matthias De vleeschouwer, Meine Ramakers, Joost Schymkowitz, Frederic Rousseau
WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides. Nucleic Acids Res. 48 (Database-Issue) (2020)
Reshmi Ramakrishnan, Bert Houben, Frederic Rousseau, Joost Schymkowitz
Differential proteostatic regulation of insoluble and abundant proteins. Bioinform. 35 (20) (2019)
Ana Zafra Ruano, Elisa Cilia, José R. Couceiro, Javier Ruiz Sanz, Joost Schymkowitz, Frederic Rousseau, Irene Luque, Tom Lenaerts
From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. PLoS Comput. Biol. 12 (5) (2016)
Raimon Sabate, Frederic Rousseau, Joost Schymkowitz, Salvador Ventura
What Makes a Protein Sequence a Prion? PLoS Comput. Biol. 11 (1) (2015)
Jacinte Beerten, Joost J. J. van Durme, Rodrigo Gallardo, Emidio Capriotti, Louise C. Serpell, Frederic Rousseau, Joost Schymkowitz
WALTZ-DB: a benchmark database of amyloidogenic hexapeptides. Bioinform. 31 (10) (2015)
Greet De Baets, Joost J. J. van Durme, Rob van der Kant, Joost Schymkowitz, Frederic Rousseau
Solubis: optimize your protein. Bioinform. 31 (15) (2015)
Rafael Zambrano, Oscar Conchillo-Solé, Valentin Iglesias, Ricard Illa, Frederic Rousseau, Joost Schymkowitz, Raimon Sabate, Xavier Daura, Salvador Ventura
PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Greet De Baets, Loic Van Doorn, Frederic Rousseau, Joost Schymkowitz
Increased Aggregation Is More Frequently Associated to Human Disease-Associated Mutations Than to Neutral Polymorphisms. PLoS Comput. Biol. 11 (9) (2015)
Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau, Louxin Zhang, Frank Eisenhaber
Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. J. Bioinform. Comput. Biol. 11 (1) (2013)
Greet De Baets, Joost J. J. van Durme, Joke Reumers, Sebastian Maurer-Stroh, Peter Vanhee, Joaquín Dopazo, Joost Schymkowitz, Frederic Rousseau
SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. Nucleic Acids Res. 40 (Database-Issue) (2012)
Greet De Baets, Joke Reumers, Javier Delgado Blanco, Joaquín Dopazo, Joost Schymkowitz, Frederic Rousseau
An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins. PLoS Comput. Biol. 7 (6) (2011)
Joost J. J. van Durme, Javier Delgado Blanco, Francois Stricher, Luis Serrano, Joost Schymkowitz, Frederic Rousseau
A graphical interface for the FoldX forcefield. Bioinform. 27 (12) (2011)
Peter Vanhee, Erik Verschueren, Lies Baeten, Francois Stricher, Luis Serrano, Frederic Rousseau, Joost Schymkowitz
BriX: a database of protein building blocks for structural analysis, modeling and design. Nucleic Acids Res. 39 (Database-Issue) (2011)
Peter Vanhee, Francois Stricher, Lies Baeten, Erik Verschueren, Luis Serrano, Frederic Rousseau, Joost Schymkowitz
Modeling protein-peptide interactions using protein fragments: fitting the pieces? BMC Bioinform. 11 (S-10) (2010)
Peter Vanhee, Joke Reumers, Francois Stricher, Lies Baeten, Luis Serrano, Joost Schymkowitz, Frederic Rousseau
PepX: a structural database of non-redundant protein-peptide complexes. Nucleic Acids Res. 38 (Database-Issue) (2010)
Joost J. J. van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz
Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data. PLoS Comput. Biol. 5 (8) (2009)
Tom Lenaerts, Jesper Ferkinghoff-Borg, Joost Schymkowitz, Frederic Rousseau
Information theoretical quantification of cooperativity in signalling complexes. BMC Syst. Biol. 3 (2009)
Joke Reumers, Joost Schymkowitz, Frederic Rousseau
Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. BMC Bioinform. 10 (S-8) (2009)
Lies Baeten, Joke Reumers, Vicente Tur, François Stricher, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz
Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments. PLoS Comput. Biol. 4 (5) (2008)
Joke Reumers, Lucía Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost J. J. van Durme, Joaquín Dopazo, Frederic Rousseau, Joost Schymkowitz
Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. Nucleic Acids Res. 36 (Database-Issue) (2008)
Ignacio E. Sánchez, Pedro Beltrão, Francois Stricher, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Frederic Rousseau, Luis Serrano
Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm. PLoS Comput. Biol. 4 (4) (2008)
Joke Reumers, Joost Schymkowitz, Frederic Rousseau
Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations. AIMM (2008)
Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Frederic Rousseau
SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. Bioinform. 22 (17) (2006)
Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Joke Reumers, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Francois Stricher, Luis Serrano, Frederic Rousseau
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs. Nucleic Acids Res. 33 (Database-Issue) (2005)
Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano
The FoldX web server: an online force field. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)