Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif.
Sebastian Maurer-StrohHe GaoHao HanLies BaetenJoost SchymkowitzFrederic RousseauLouxin ZhangFrank EisenhaberPublished in: J. Bioinform. Comput. Biol. (2013)
Keyphrases
- motif discovery
- protein structure
- data mining tasks
- data mining
- protein tertiary structure
- databases
- protein sequences
- pattern discovery
- biological sequences
- data mining algorithms
- protein structure prediction
- knowledge discovery
- contact map
- sequence databases
- molecular biology
- computational biology
- motif discovery algorithm
- dna sequences
- experimentally determined
- motif finding
- transcription factor binding sites
- dna binding
- data mining applications
- binding sites
- sequence analysis
- multiobjective optimization
- amino acids
- protein function
- secondary structure
- data mining techniques
- protein structural
- data warehouse
- data analysis
- machine learning
- association rules
- similarity search
- data mining methods
- association rule mining
- preprocessing
- multi objective
- data model
- amino acid sequences
- data integration
- pairwise
- sequence data
- biological data
- text mining
- psi blast
- sequential patterns
- social networks