WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
Giulio PavesiFederico ZambelliGraziano PesolePublished in: BMC Bioinform. (2007)
Keyphrases
- sequence alignment
- expectation maximization
- optimal solution
- computational complexity
- worst case
- np hard
- dynamic programming
- detection algorithm
- cost function
- preprocessing
- search space
- segmentation algorithm
- region of interest
- probabilistic model
- k means
- matching algorithm
- objective function
- learning algorithm
- markov random field