Matteo Re

Publication Activity (10 Years)

Years Active: 2007-2018
Publications (10 Years): 4

Top Topics

Biologically Meaningful

Interaction Networks

Ranking Algorithm

Unbalanced Data

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Artif. Intell. Medicine

Publications

Cheick Tidiane Ba, Elena Casiraghi, Marco Frasca, Jessica Gliozzo, Giuliano Grossi, Marco Mesiti, Marco Notaro, Paolo Perlasca, Alessandro Petrini, Matteo Re, Giorgio Valentini
A Graphical Tool for the Exploration and Visual Analysis of Biomolecular Networks. CIBB (2018)
Jianyi Lin, Marco Mesiti, Matteo Re, Giorgio Valentini
Within network learning on big graphs using secondary memory-based random walk kernels. COMPLEX NETWORKS (2016)
Giorgio Valentini, Giuliano Armano, Marco Frasca, Jianyi Lin, Marco Mesiti, Matteo Re
: a flexible tool for node label ranking and classification in biological networks. Bioinform. 32 (18) (2016)
Peter N. Robinson, Marco Frasca, Sebastian Köhler, Marco Notaro, Matteo Re, Giorgio Valentini
A Hierarchical Ensemble Method for DAG-Structured Taxonomies. MCS (2015)
Giorgio Valentini, Alberto Paccanaro, Horacio Caniza, Alfonso E. Romero, Matteo Re
An extensive analysis of disease-gene associations using network integration and fast kernel-based gene prioritization methods. Artif. Intell. Medicine 61 (2) (2014)
Marco Frasca, Alberto Bertoni, Matteo Re, Giorgio Valentini
A neural network algorithm for semi-supervised node label learning from unbalanced data. Neural Networks 43 (2013)
Matteo Re, Giorgio Valentini
Network-Based Drug Ranking and Repositioning with Respect to DrugBank Therapeutic Categories. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Matteo Re, Giorgio Valentini
Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories. ISBRA (2012)
Nicolò Cesa-Bianchi, Matteo Re, Giorgio Valentini
Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference. Mach. Learn. 88 (1-2) (2012)
Matteo Re, Giorgio Valentini
Cancer module genes ranking using kernelized score functions. BMC Bioinform. 13 (S-14) (2012)
Matteo Re, Marco Mesiti, Giorgio Valentini
A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Matteo Re, Giorgio Valentini
Random Walking on Functional Interaction Networks to Rank Genes Involved in Cancer. AIAI (2) (2012)
Alberto Bertoni, Matteo Re, Francesco Saccà, Giorgio Valentini
Identification of promoter regions in genomic sequences by 1-dimensional constraint clustering. WIRN (2011)
Matteo Re, Giorgio Valentini
An Experimental Comparison of Hierarchical Bayes and True Path Rule Ensembles for Protein Function Prediction. MCS (2010)
Matteo Re, Giorgio Valentini
Integration of heterogeneous data sources for gene function prediction using decision templates and ensembles of learning machines. Neurocomputing 73 (7-9) (2010)
Matteo Re, Giorgio Valentini
Noise tolerance of Multiple Classifier Systems in data integration-based gene function prediction. J. Integr. Bioinform. 7 (3) (2010)
Matteo Re, Giorgio Valentini
Ensemble Based Data Fusion for Gene Function Prediction. MCS (2009)
Matteo Re, Graziano Pesole, David Stephen Horner
Accurate discrimination of conserved coding and non-coding regions through multiple indicators of evolutionary dynamics. BMC Bioinform. 10 (2009)
Matteo Re, Giorgio Valentini
Comparing early and late data fusion methods for gene function prediction. WIRN (2009)
Roberto Avogadri, Matteo Brioschi, Fulvia Ferrazzi, Matteo Re, Alessandro Beghini, Giorgio Valentini
A stability-based algorithm to validate hierarchical clusters of genes. Int. J. Knowl. Eng. Soft Data Paradigms 1 (4) (2009)
Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
A high performance grid-web service framework for the identification of 'conserved sequence tags'. Future Gener. Comput. Syst. 23 (3) (2007)