Marco Mesiti

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 38

Top Topics

Scientific Publications

Protein Function Prediction

Top Venues

Publications

Emanuele Cavalleri, Marco Mesiti
On the Extraction of Meaningful RNA Interactions from Scientific Publications through LLMs and SPIRES. EDBT/ICDT Workshops (2024)
Marco Nicolini, Dario Malchiodi, Alberto Cabri, Emanuele Cavalleri, Marco Mesiti, Alberto Paccanaro, Peter N. Robinson, Justin T. Reese, Elena Casiraghi, Giorgio Valentini
Fine-Tuning of Conditional Transformers Improves the Generation of Functionally Characterized Proteins. BIOSTEC (1) (2024)
Emanuele Cavalleri, Marco Mesiti
Construction and Enhancement of an RNA-Based Knowledge Graph for Discovering New RNA Drugs. ICDE (2024)
Emanuele Cavalleri, Mauricio Soto Gomez, Ali Pashaeibarough, Dario Malchiodi, J. Harry Caufield, Justin T. Reese, Christopher J. Mungall, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
Initial achievements in relation extraction from RNA-focused scientific papers. SEBD (2024)
Marco Mesiti, Mario Pennacchioni, Paolo Perlasca
Indexing Structures for the Efficient Multi-Resolution Visualization of Big Graphs. IEEE Access 11 (2023)
Giorgio Valentini, Dario Malchiodi, Jessica Gliozzo, Marco Mesiti, Mauricio Soto Gomez, Alberto Cabri, Justin T. Reese, Elena Casiraghi, Peter N. Robinson
The promises of large language models for protein design and modeling. Frontiers Bioinform. 3 (2023)
Emanuele Cavalleri, Alberto Cabri, Mauricio Soto Gomez, Sara Bonfitto, Paolo Perlasca, Jessica Gliozzo, Tiffany J. Callahan, Justin T. Reese, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules. CoRR (2023)
Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
Towards the Construction of an RNA-centered Knowledge Graph. SEBD (2023)
Sara Bonfitto, Paolo Perlasca, Marco Mesiti
Easy-to-use Interfaces for Supporting the Semantic Annotation of Web Tables. EDBT/ICDT Workshops (2023)
Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph. IWBBIO (1) (2023)
Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR (2023)
Jessica Gliozzo, Marco Mesiti, Marco Notaro, Alessandro Petrini, Alex Patak, Antonio Puertas Gallardo, Alberto Paccanaro, Giorgio Valentini, Elena Casiraghi
Heterogeneous data integration methods for patient similarity networks. Briefings Bioinform. 23 (4) (2022)
Paolo Perlasca, Marco Frasca, Cheick Tidiane Ba, Jessica Gliozzo, Marco Notaro, Mario Pennacchioni, Giorgio Valentini, Marco Mesiti
Integration and Visual Analysis of Biomolecular Networks Through UNIPred-Web. ICWE Workshops (2022)
Sara Bonfitto, Elena Casiraghi, Marco Mesiti
Table understanding approaches for extracting knowledge from heterogeneous tables. WIREs Data Mining Knowl. Discov. 11 (4) (2021)
Sara Bonfitto, Luca Cappelletti, Elena Casiraghi, Paolo Perlasca, Fabrizio Trovato, Giorgio Valentini, Marco Mesiti
A Web Tool for the Semantic Integration of Heterogeneous and Complex Spreadsheet Tables. SEBD (2021)
Sara Bonfitto, Luca Cappelletti, Fabrizio Trovato, Giorgio Valentini, Marco Mesiti
Semi-automatic Column Type Inference for CSV Table Understanding. SOFSEM (2021)
Mario Pennacchioni, Emanuele Munarini, Marco Mesiti
The Sum Composition Problem. CoRR (2020)
Stefano Valtolina, Luca Ferrari, Marco Mesiti
Ontology-Based Consistent Specification of Sensor Data Acquisition Plans in Cross-Domain IoT Platforms. IEEE Access 7 (2019)
Luca Cappelletti, Stefano Valtolina, Giorgio Valentini, Marco Mesiti, Elisa Bertino
On the Quality of Classification Models for Inferring ABAC Policies from Access Logs. IEEE BigData (2019)
Paolo Perlasca, Marco Frasca, Cheick Tidiane Ba, Marco Notaro, Alessandro Petrini, Elena Casiraghi, Giuliano Grossi, Jessica Gliozzo, Giorgio Valentini, Marco Mesiti
UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction. BMC Bioinform. 20 (1) (2019)
Stefano Valtolina, Fatmeh Hachem, Barbara Rita Barricelli, Elefelious Getachew Belay, Sara Bonfitto, Marco Mesiti
Facilitating the Development of IoT Applications in Smart City Platforms. IS-EUD (2019)
Sara Bonfitto, Fatima Hachem, Elefelious Getachew Belay, Stefano Valtolina, Marco Mesiti
On the Bulk Ingestion of IoT Devices from Heterogeneous IoT Brokers. ICIOT (2019)
Marco Frasca, Giuliano Grossi, Jessica Gliozzo, Marco Mesiti, Marco Notaro, Paolo Perlasca, Alessandro Petrini, Giorgio Valentini
A GPU-based algorithm for fast node label learning in large and unbalanced biomolecular networks. BMC Bioinform. (10) (2018)
Luca Ferrari, Stefano Valtolina, Marco Mesiti
Developing IoT Spark-Streaming Applications by Means of StreamLoader. UNet (2018)
Pierfrancesco Bellini, Marco Mesiti, Paolo Nesi, Paolo Perlasca
Protection and composition of crossmedia content in collaborative environments. Multim. Tools Appl. 77 (2) (2018)
Cheick Tidiane Ba, Elena Casiraghi, Marco Frasca, Jessica Gliozzo, Giuliano Grossi, Marco Mesiti, Marco Notaro, Paolo Perlasca, Alessandro Petrini, Matteo Re, Giorgio Valentini
A Graphical Tool for the Exploration and Visual Analysis of Biomolecular Networks. CIBB (2018)
Claudio Badii, Elefelious G. Belay, Pierfrancesco Bellini, Daniele Cenni, Mino Marazzini, Marco Mesiti, Paolo Nesi, Gianni Pantaleo, Michela Paolucci, Stefano Valtolina, Mirco Soderi, Imad Zaza
Snap4City: A Scalable IOT/IOE Platform for Developing Smart City Applications. SmartWorld/SCALCOM/UIC/ATC/CBDCom/IOP/SCI (2018)
Marco Notaro, Max Schubach, Marco Frasca, Marco Mesiti, Peter N. Robinson, Giorgio Valentini
Ensembling Descendant Term Classifiers to Improve Gene - Abnormal Phenotype Predictions. CIBB (2017)
Marco Frasca, Jean-Fred Fontaine, Giorgio Valentini, Marco Mesiti, Marco Notaro, Dario Malchiodi, Miguel A. Andrade-Navarro
Disease-Genes Must Guide Data Source Integration in the Gene Prioritization Process. CIBB (2017)
Luca Ferrari, Marco Mesiti, Stefano Valtolina
Soundness and Ontology-Based Consistency of Sensor Data Acquisition Plans. EKAW (Satellite Events) (2016)
Jianyi Lin, Marco Mesiti, Matteo Re, Giorgio Valentini
Within network learning on big graphs using secondary memory-based random walk kernels. COMPLEX NETWORKS (2016)
Marco Mesiti, Luca Ferrari, Stefano Valtolina, Giacomo Licari, Gian Luca Galliani, Minh-Son Dao, Koji Zettsu
streamLoader: An Event-Driven ETL System for the On-line Processing of Heterogeneous Sensor Data. EDBT (2016)
Giorgio Valentini, Giuliano Armano, Marco Frasca, Jianyi Lin, Marco Mesiti, Matteo Re
: a flexible tool for node label ranking and classification in biological networks. Bioinform. 32 (18) (2016)
Paolo Perlasca, Giorgio Valentini, Marco Frasca, Marco Mesiti
Multi-species protein function prediction: towards web-based visual analytics. iiWAS (2016)
Stefano Valtolina, Barbara Rita Barricelli, Marco Mesiti
End-User Centered Events Detection and Management in the Internet of Things. ICWE Workshops (2015)
Marco Mesiti, Stefano Valtolina, Luca Ferrari, Minh-Son Dao, Koji Zettsu
An editable live ETL system for Ambient Intelligence environments. WF-IoT (2015)
Stefano Valtolina, Marco Mesiti, Luca Ferrari, Koji Zettsu, Minh-Son Dao
User-Centered Event Data Modelling and Analytics. CoPDA@IS-EUD (2015)
Marco Mesiti
MergeGraphs: a web-based system for merging heterogeneous big graphs. iiWAS (2015)
Stefano Valtolina, Marco Mesiti, Francesco Epifania, Bruno Apolloni
Towards a social e-learning platform for demanding users. EDUCON (2014)
Marco Mesiti, Stefano Valtolina, Simone Bassis, Francesco Epifania, Bruno Apolloni
e-Teaching Assistant - A Social Intelligent Platform Supporting Teachers in the Collaborative Creation of Courses. CSEDU (1) (2014)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
XSPath: Navigation on XML Schemas Made Easy. IEEE Trans. Knowl. Data Eng. 26 (2) (2014)
Horacio Caniza, Alfonso E. Romero, Samuel Heron, Haixuan Yang, Alessandra Devoto, Marco Frasca, Marco Mesiti, Giorgio Valentini, Alberto Paccanaro
GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology. Bioinform. 30 (15) (2014)
Marco Mesiti, Stefano Valtolina
Towards a User-Friendly Loading System for the Analysis of Big Data in the Internet of Things. COMPSAC Workshops (2014)
Marco Mesiti, Paolo Perlasca, Stefano Valtolina
On the Composition of Digital Licenses in Collaborative Environments. DEXA (1) (2013)
Matteo Re, Marco Mesiti, Giorgio Valentini
A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Stefano Valtolina, Barbara Rita Barricelli, Marco Mesiti, Marina Ribaudo
User-Centered Design of E-Learning Tools for Users with Special Needs: The VisualPedia Case Study. IxD&A (2012)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
Updates on XML documents and schemas. ICDE Workshops (2011)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
Updating XML schemas and associated documents through exup. ICDE (2011)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
Reverting the Effects of XQuery Update Expressions. BNCOD (2011)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
Handling XML Updates in Distributed Contexts. SEBD (2011)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
Dynamic reasoning on XML updates. EDBT (2011)
Alsayed Algergawy, Marco Mesiti, Richi Nayak, Gunter Saake
XML data clustering: An overview. ACM Comput. Surv. 43 (4) (2011)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti, Barbara Oliboni
On the reduction of sequences of XML document and schema update operations. ICDE Workshops (2011)
Andrea Bozza, Marco Mesiti, Stefano Valtolina, Silvia Dini, Marina Ribaudo
Accessibility and Usability of a Collaborative e-Learning Application. CSEDU (1) (2010)
Michael Benedikt, Daniela Florescu, Philippa Gardner, Giovanna Guerrini, Marco Mesiti, Emmanuel Waller
Report on the EDBT/ICDT 2010 workshop on updates in XML. SIGMOD Rec. 39 (1) (2010)
Roald Lengu, Paolo Missier, Alvaro A. A. Fernandes, Giovanna Guerrini, Marco Mesiti
Time-completeness trade-offs in record linkage using adaptive query processing. EDBT (2009)
Paolo Missier, Alvaro A. A. Fernandes, Roald Lengu, Giovanna Guerrini, Marco Mesiti
Data Quality support to on-the-fly data integration using Adaptive Query Processing. SEBD (2009)
Marco Mesiti, Ernesto Jiménez-Ruiz, Ismael Sanz, Rafael Berlanga Llavori, Paolo Perlasca, Giorgio Valentini, David Manset
XML-based approaches for the integration of heterogeneous bio-molecular data. BMC Bioinform. 10 (S-12) (2009)
Patrizia Boccacci, Marina Ribaudo, Marco Mesiti
A Collaborative Environment for the Design of Accessible Educational Objects. Web Intelligence/IAT Workshops (2009)
Elisa Bertino, Giovanna Guerrini, Marco Mesiti
Measuring the structural similarity among XML documents and DTDs. J. Intell. Inf. Syst. 30 (1) (2008)
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga Llavori
An Entropy-Based Characterization of the Heterogeneity of XML Collections. DEXA Workshops (2008)
Federico Cavalieri, Giovanna Guerrini, Marco Mesiti
Navigational Path Expressions on XML Schemas. DEXA (2008)
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga Llavori
ArHeX: A Framework for Approximate Retrieval in Heterogeneous. SEBD (2008)
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga Llavori
Fragment-based approximate retrieval in highly heterogeneous XML collections. Data Knowl. Eng. 64 (1) (2008)
Giovanna Guerrini, Marco Mesiti
X-Evolution: A Comprehensive Approach for XML Schema Evolution. DEXA Workshops (2008)
Giovanna Guerrini, Marco Mesiti, Matteo Alberto Sorrenti
XML Schema Evolution: Incremental Validation and Efficient Document Adaptation. XSym (2007)
Ismael Sanz, Rafael Berlanga Llavori, Marco Mesiti, Giovanna Guerrini
ArHeX: Flexible Composition of Indexes and Similarity Measures for XML. ICDE Workshops (2007)
Marco Mesiti, Roberto Celle, Matteo Alberto Sorrenti, Giovanna Guerrini
X-Evolution: A System for XML Schema Evolution and Document Adaptation. EDBT (2006)
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga Llavori
: An Approximate Retrieval System for Highly Heterogeneous XML Document Collections. EDBT (2006)
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga Llavori
Highly Heterogeneous XML Collections: How to Retrieve Precise Results?. FQAS (2006)
Giovanna Guerrini, Viviana Mascardi, Marco Mesiti
A Semantic Information Retrieval Advertisement and Policy Based System for a P2P Network. DBISP2P (2005)
Giovanna Guerrini, Marco Mesiti, Daniele Rossi
Impact of XML schema evolution on valid documents. WIDM (2005)
Ismael Sanz, Marco Mesiti, Giovanna Guerrini, Rafael Berlanga Llavori
Approximate Subtree Identification in Heterogeneous XML Documents Collections. XSym (2005)
Elisa Bertino, Giovanna Guerrini, Marco Mesiti
DiXeminator: A Profile-Based Selective Dissemination System for XML Documents. EDBT Workshops (2004)
Marco Mesiti, Barbara Catania, Giovanna Guerrini, Akmal B. Chaudhri
EDBT04 Workshop on Database Technologies for Handling XML Information on the Web. SIGMOD Rec. 33 (2) (2004)
Elisa Bertino, Giovanna Guerrini, Marco Mesiti
Exploiting User-Profiles for the Selective Dissemination of XML Documents. SEBD (2004)
Elisa Bertino, Giovanna Guerrini, Marco Mesiti
A matching algorithm for measuring the structural similarity between an XML document and a DTD and its applications. Inf. Syst. 29 (1) (2004)
Elisa Bertino, Marco Mesiti, Munir Cochinwala
A Trigger-Based Approach for Communication Personalization. IDEAS (2004)
Elena Camossi, Elisa Bertino, Marco Mesiti, Giovanna Guerrini
Handling Expiration of Multigranular Temporal Objects. J. Log. Comput. 14 (1) (2004)
Minos N. Garofalakis, Ioana Manolescu, Marco Mesiti, George A. Mihaila, Ralf Schenkel, Bhavani M. Thuraisingham, Vasilis Vassalos
What's Next in XML and Databases? EDBT Workshops (2004)
Davide Buscaldi, Giovanna Guerrini, Marco Mesiti, Paolo Rosso
Tag semantics for the retrieval of XML documents. ISICT (2003)
Marco Mesiti, Elisa Bertino, Giovanna Guerrini
An abstraction-based approach to measuring the structural similarity between two unordered XML documents. ISICT (2003)
Elisa Bertino, Stefano Franzoni, Marco Mesiti
Memorizzazione di regole per l'instradamento di messaggi in un sistema di comunicazione universale. SEBD (2003)
Elisa Bertino, Giovanna Guerrini, Marco Mesiti, Luigi Tosetto
Evolving a Set of DTDs According to a Dynamic Set of XML Documents. EDBT Workshops (2002)
Elisa Bertino, Giovanna Guerrini, Marco Mesiti
Matching an XML Document against a Set of DTDs. ISMIS (2002)
Elisa Bertino, Munir Cochinwala, Marco Mesiti
UCS-Router: A Policy Engine for Enforcing Message Routing Rules in a Universal Communication System. Mobile Data Management (2002)
Elisa Bertino, Silvana Castano, Elena Ferrari, Marco Mesiti
Protection and administration of XML data sources. Data Knowl. Eng. 43 (3) (2002)
Marco Mesiti
Classification and Querying of XML Documents. EDBT PhD Workshop (2002)
Elena Camossi, Elisa Bertino, Giovanna Guerrini, Marco Mesiti
Evolution Specification of Multigranular Temporal Objects. TIME (2002)
Elisa Bertino, M. Braun, Silvana Castano, Elena Ferrari, Marco Mesiti
Author-X: A Java-Based System for XML Data Protection. DBSec (2000)
Chung-Min Chen, Munir Cochinwala, Claudio Petrone, Marc Pucci, Sunil Samtani, Patrizia Santa, Marco Mesiti
Internet Traffic Warehouse. SIGMOD Conference (2000)
Elisa Bertino, Silvana Castano, Elena Ferrari, Marco Mesiti
Specifying and enforcing access control policies for XML document sources. World Wide Web 3 (3) (2000)
Giovanna Guerrini, Isabella Merlo, Marco Mesiti
Handling Semi-Structured Data through an Extended Object-Oriented Data Model. SEBD (1999)
Elisa Bertino, Silvana Castano, Elena Ferrari, Marco Mesiti
Controlled Access and Dissemination of XML Documents. Workshop on Web Information and Data Management (1999)
Elisa Bertino, Giovanna Guerrini, Isabella Merlo, Marco Mesiti
An Approach to Classify Semi-structured Objects. ECOOP (1999)