Mauricio Soto Gomez

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 13

Top Topics

Perfect Phylogeny

Horizontal Gene Transfer

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Emanuele Cavalleri, Mauricio Soto Gomez, Ali Pashaeibarough, Dario Malchiodi, J. Harry Caufield, Justin T. Reese, Christopher J. Mungall, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
Initial achievements in relation extraction from RNA-focused scientific papers. SEBD (2024)
Giorgio Valentini, Dario Malchiodi, Jessica Gliozzo, Marco Mesiti, Mauricio Soto Gomez, Alberto Cabri, Justin T. Reese, Elena Casiraghi, Peter N. Robinson
The promises of large language models for protein design and modeling. Frontiers Bioinform. 3 (2023)
Emanuele Cavalleri, Alberto Cabri, Mauricio Soto Gomez, Sara Bonfitto, Paolo Perlasca, Jessica Gliozzo, Tiffany J. Callahan, Justin T. Reese, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules. CoRR (2023)
Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
Towards the Construction of an RNA-centered Knowledge Graph. SEBD (2023)
Emanuele Cavalleri, Sara Bonfitto, Alberto Cabri, Jessica Gliozzo, Paolo Perlasca, Mauricio Soto Gomez, Gabriella Trucco, Elena Casiraghi, Giorgio Valentini, Marco Mesiti
A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph. IWBBIO (1) (2023)
Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic, Mauricio Soto Gomez
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison. Algorithms 16 (7) (2023)
Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova
Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses. Bioinform. 37 (3) (2021)
Simone Ciccolella, Mauricio Soto Gomez, Murray D. Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. BMC Bioinform. (1) (2020)
Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez
Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Andrea Maurino, Anisa Rula, Bjørn Marius von Zernichow, Mauricio Soto Gomez, Brian Elvesæter, Dumitru Roman
Modelling and Linking Company Data in the euBusinessGraph Platform. DSMM@SIGMOD (2019)
Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. ICCABS (2018)
Gianluca Della Vedova, Murray Patterson, Raffaella Rizzi, Mauricio Soto Gomez
Character-Based Phylogeny Construction and Its Application to Tumor Evolution. CiE (2017)
Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez
Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP. BCB (2017)