Simone Ciccolella

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 15

Top Topics

Perfect Phylogeny

Top Venues

J. Comput. Biol.

Publications

Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. J. Comput. Biol. 30 (4) (2023)
Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic, Mauricio Soto Gomez
Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison. Algorithms 16 (7) (2023)
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. CoRR (2022)
Simone Ciccolella, Murray Patterson, Paola Bonizzoni, Gianluca Della Vedova
Effective Clustering for Single Cell Sequencing Cancer Data. IEEE J. Biomed. Health Informatics 25 (11) (2021)
Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova
Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses. Bioinform. 37 (3) (2021)
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data. ICCABS (2021)
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali
MALVIRUS: an integrated application for viral variant analysis. BMC Bioinform. (15) (2021)
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali
MALVIRUS: an integrated application for viral variant analysis. BMC Bioinform. (15) (2021)
Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels. Bioinform. 37 (2) (2021)
Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella, Gianluca Della Vedova, Murray Patterson
Simpler and Faster Development of Tumor Phylogeny Pipelines. J. Comput. Biol. 28 (11) (2021)
Simone Ciccolella, Mauricio Soto Gomez, Murray D. Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. BMC Bioinform. (1) (2020)
Simone Ciccolella, Murray D. Patterson, Paola Bonizzoni, Gianluca Della Vedova
Effective Clustering for Single Cell Sequencing Cancer Data. BCB (2019)
Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez
Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. ICCABS (2018)
Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto Gomez
Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP. BCB (2017)