Marco Previtali

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 23

Top Topics

Graph Construction

External Memory

Top Venues

J. Comput. Biol.

Publications

Paola Bonizzoni, Matteo Costantini, Clelia de Felice, Alessia Petescia, Yuri Pirola, Marco Previtali, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches. Inf. Sci. 607 (2022)
Paola Bonizzoni, Matteo Costantini, Clelia De Felice, Alessia Petescia, Yuri Pirola, Marco Previtali, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza
Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches. CoRR (2022)
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali
MALVIRUS: an integrated application for viral variant analysis. BMC Bioinform. (15) (2021)
Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni
Shark: fishing relevant reads in an RNA-Seq sample. Bioinform. 37 (4) (2021)
Simone Ciccolella, Luca Denti, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali
MALVIRUS: an integrated application for viral variant analysis. BMC Bioinform. (15) (2021)
Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova
Triplet-based similarity score for fully multilabeled trees with poly-occurring labels. Bioinform. 37 (2) (2021)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Computing the multi-string BWT and LCP array in external memory. Theor. Comput. Sci. 862 (2021)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array. J. Comput. Biol. 26 (9) (2019)
Raffaella Rizzi, Stefano Beretta, Murray Patterson, Yuri Pirola, Marco Previtali, Gianluca Della Vedova, Paola Bonizzoni
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era. Quant. Biol. 7 (4) (2019)
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi
Bidirectional Variable-Order de Bruijn Graphs. Int. J. Found. Comput. Sci. 29 (8) (2018)
Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events. BMC Bioinform. 19 (1) (2018)
Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Divide and Conquer Computation of the Multi-string BWT and LCP Array. CiE (2018)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
FSG: Fast String Graph Construction for De Novo Assembly. J. Comput. Biol. 24 (10) (2017)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
An External-Memory Algorithm for String Graph Construction. Algorithmica 78 (2) (2017)
Stefano Beretta, Paola Bonizzoni, Luca Denti, Marco Previtali, Raffaella Rizzi
Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext. AlCoB (2017)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Computing the BWT and LCP array of a Set of Strings in External Memory. CoRR (2017)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly. J. Comput. Biol. 23 (3) (2016)
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali
Fully Dynamic de Bruijn Graphs. SPIRE (2016)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
FSG: Fast String Graph Construction for De Novo Assembly of Reads Data. ISBRA (2016)
Paola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Marco Previtali, Raffaella Rizzi
A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings. CoRR (2016)
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali, Simon J. Puglisi
Bidirectional Variable-Order de Bruijn Graphs. LATIN (2016)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
FSG: Fast String Graph Construction for De Novo Assembly of Reads Data. CoRR (2016)
Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Marco Previtali
Fully Dynamic de Bruijn Graphs. CoRR (2016)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Constructing String Graphs in External Memory. CoRR (2014)
Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Constructing String Graphs in External Memory. WABI (2014)