Sarwan Ali

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 87

Top Topics

Sequence Classification

Machine Learning

Biological Sequences

Top Venues

J. Comput. Biol.

Publications

Taslim Murad, Sarwan Ali, Murray Patterson
Weighted Chaos Game Representation for Molecular Sequence Classification. PKDD (4) (2024)
Sarwan Ali, Pablo Moscato
A Memetic Algorithm To Find a Hamiltonian Cycle in a Hamiltonian Graph. CoRR (2024)
Sarwan Ali, Haris Mansoor, Prakash Chourasia, Yasir Ali, Murray Patterson
Gaussian Beltrami-Klein Model for Protein Sequence Classification: A Hyperbolic Approach. ISBRA (1) (2024)
Sarwan Ali, Prakash Chourasia, Murray Patterson
Expanding Chemical Representation with k-mers and Fragment-based Fingerprints for Molecular Fingerprinting. CoRR (2024)
Sarwan Ali, Muhammad Ahmad, Maham Anwer Beg, Imdadullah Khan, Safiullah Faizullah, Muhammad Asad Khan
SsAG: Summarization and Sparsification of Attributed Graphs. ACM Trans. Knowl. Discov. Data 18 (6) (2024)
Sarwan Ali, Tamkanat E. Ali, Prakash Chourasia, Murray Patterson
A Universal Non-parametric Approach for Improved Molecular Sequence Analysis. PKDD (4) (2024)
Zahra Tayebi, Sarwan Ali, Taslim Murad, Imdadullah Khan, Murray Patterson
PseAAC2Vec protein encoding for TCR protein sequence classification. Comput. Biol. Medicine 170 (2024)
Sarwan Ali, Tamkanat E. Ali, Taslim Murad, Haris Mansoor, Murray Patterson
Molecular sequence classification using efficient kernel based embedding. Inf. Sci. 679 (2024)
Sarwan Ali, Tamkanat E. Ali, Prakash Chourasia, Murray Patterson
A Universal Non-Parametric Approach For Improved Molecular Sequence Analysis. CoRR (2024)
Muhammad Sohaib Ayub, Naimat Ullah, Sarwan Ali, Imdadullah Khan, Mian Muhammad Awais, Muhammad Asad Khan, Safiullah Faizullah
CAMP: A context-aware cricket players performance metric. J. Oper. Res. Soc. 75 (6) (2024)
Sarwan Ali, Prakash Chourasia, Murray Patterson
From PDB files to protein features: a comparative analysis of PDB bind and STCRDAB datasets. Medical Biol. Eng. Comput. 62 (8) (2024)
Taslim Murad, Sarwan Ali, Murray Patterson
Exploring The Potential Of GANs In Biological Sequence Analysis. CoRR (2023)
Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Pin-Yu Chen, Imdadullah Khan, Murray Patterson
Counterfactually Guided Policy Transfer in Clinical Settings. CHIL (2023)
Taslim Murad, Sarwan Ali, Imdadullah Khan, Murray Patterson
Spike2CGR: an efficient method for spike sequence classification using chaos game representation. Mach. Learn. 112 (10) (2023)
Taslim Murad, Sarwan Ali, Prakash Chourasia, Haris Mansoor, Murray Patterson
Circular Arc Length-Based Kernel Matrix For Protein Sequence Classification. BigData (2023)
Sarwan Ali, Taslim Murad, Murray Patterson
PCD2Vec: A Poisson Correction Distance-Based Approach for Viral Host Classification. CoRR (2023)
Sarwan Ali, Pin-Yu Chen, Murray Patterson
Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences. ISBRA (2023)
Sarwan Ali, Prakash Chourasia, Murray Patterson
When Biology has Chemistry: Solubility And Drug Subcategory Prediction using SMILES Strings. Tiny Papers @ ICLR (2023)
Prakash Chourasia, Zahra Tayebi, Sarwan Ali, Murray Patterson
Empowering Pandemic Response with Federated Learning for Protein Sequence Data Analysis. IJCNN (2023)
Mansoor Ahmed, Usama Sardar, Sarwan Ali, Shafiq Alam, Murray Patterson, Imdadullah Khan
Robust Brain Age Estimation via Regression Models and MRI-Derived Features. ICCCI (CCIS Volume) (2023)
Sarwan Ali, Haris Mansoor, Prakash Chourasia, Murray Patterson
Hist2Vec: Kernel-Based Embeddings for Biological Sequence Classification. ISBRA (2023)
Zohair Raza Hassan, Sarwan Ali, Imdadullah Khan, Mudassir Shabbir, Waseem Abbas
Computing Graph Descriptors on Edge Streams. ACM Trans. Knowl. Discov. Data 17 (8) (2023)
Sarwan Ali, Taslim Murad, Murray Patterson
PCD2Vec: A Poisson Correction Distance Based Approach for Viral Host Classification. IJCNN (2023)
Mansoor Ahmed, Usama Sardar, Sarwan Ali, Shafiq Alam, Murray Patterson, Imdadullah Khan
Robust Brain Age Estimation via Regression Models and MRI-derived Features. CoRR (2023)
Muhammad Sohaib Ayub, Naimat Ullah, Sarwan Ali, Imdadullah Khan, Mian Muhammad Awais, Muhammad Asad Khan, Safiullah Faizullah
CAMP: A Context-Aware Cricket Players Performance Metric. CoRR (2023)
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. J. Comput. Biol. 30 (4) (2023)
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdadullah Khan, Murray Patterson
Efficient Approximate Kernel Based Spike Sequence Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Sarwan Ali, Prakash Chourasia, Zahra Tayebi, Babatunde Bello, Murray Patterson
ViralVectors: compact and scalable alignment-free virome feature generation. Medical Biol. Eng. Comput. 61 (10) (2023)
Sarwan Ali, Prakash Chourasia, Zahra Tayebi, Babatunde Bello, Murray Patterson
ViralVectors: Compact and Scalable Alignment-free Virome Feature Generation. CoRR (2023)
Sarwan Ali, Usama Sardar, Murray Patterson, Imdadullah Khan
BioSequence2Vec: Efficient Embedding Generation For Biological Sequences. CoRR (2023)
Prakash Chourasia, Taslim Murad, Sarwan Ali, Murray Patterson
Enhancing t-SNE Performance for Biological Sequencing Data Through Kernel Selection. ISBRA (2023)
Sarwan Ali, Usama Sardar, Imdadullah Khan, Murray Patterson
Efficient Sequence Embedding for SARS-CoV-2 Variants Classification. ISBRA (2023)
Usama Sardar, Sarwan Ali, Muhammad Sohaib Ayub, Muhammad Shoaib, Khurram Bashir, Imdadullah Khan, Murray Patterson
Sequence-Based Nanobody-Antigen Binding Prediction. ISBRA (2023)
Zahra Tayebi, Sarwan Ali, Prakash Chourasia, Taslim Murad, Murray Patterson
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer Classification. CoRR (2023)
Sarwan Ali, Usama Sardar, Murray Patterson, Imdadullah Khan
BioSequence2Vec: Efficient Embedding Generation for Biological Sequences. PAKDD (2) (2023)
Sarwan Ali, Prakash Chourasia, Murray Patterson
PDB2Vec: Using 3D Structural Information for Improved Protein Analysis. ISBRA (2023)
Prakash Chourasia, Taslim Murad, Zahra Tayebi, Sarwan Ali, Imdadullah Khan, Murray Patterson
Efficient Classification of SARS-CoV-2 Spike Sequences Using Federated Learning. CoRR (2023)
Usama Sardar, Sarwan Ali, Muhammad Sohaib Ayub, Muhammad Shoaib, Khurram Bashir, Imdadullah Khan, Murray Patterson
Sequence-Based Nanobody-Antigen Binding Prediction. CoRR (2023)
Sarwan Ali, Babatunde Bello, Zahra Tayebi, Murray Patterson
Characterizing SARS-CoV-2 Spike Sequences Based on Geographical Location. J. Comput. Biol. 30 (4) (2023)
Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Pin-Yu Chen, Imdadullah Khan, Murray Patterson
Virus2Vec: Viral Sequence Classification Using Machine Learning. CoRR (2023)
Zahra Tayebi, Sarwan Ali, Prakash Chourasia, Taslim Murad, Murray Patterson
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer Classification. ICONIP (10) (2023)
Haris Mansoor, Sarwan Ali, Imdadullah Khan, Naveed Arshad, Muhammad Asad Khan, Safiullah Faizullah
Short-Term Load Forecasting Using AMI Data. IEEE Internet Things J. 10 (24) (2023)
Sarwan Ali
Information We Can Extract About a User from 'One Minute Mobile Application Usage'. INFOCOM Workshops (2023)
Sarwan Ali
Beyond Accuracy: Measuring Representation Capacity of Embeddings to Preserve Structural and Contextual Information. CoRR (2023)
Taslim Murad, Sarwan Ali, Murray Patterson
A New Direction in Membranolytic Anticancer Peptides classification: Combining Spaced k-mers with Chaos Game Representation. INNS DLIA@IJCNN (2023)
Sarwan Ali, Prakash Chourasia, Murray Patterson
Anderson Acceleration for Bioinformatics-Based Machine Learning. KDH@IJCAI (2023)
Sarwan Ali, Prakash Chourasia, Murray Patterson
Anderson Acceleration For Bioinformatics-Based Machine Learning. CoRR (2023)
Sarwan Ali
Evaluating COVID-19 Sequence Data Using Nearest-Neighbors Based Network Model. Big Data (2022)
Sarwan Ali, Yijing Zhou, Murray Patterson
Efficient analysis of COVID-19 clinical data using machine learning models. Medical Biol. Eng. Comput. 60 (7) (2022)
Haris Mansoor, Sarwan Ali, Shafiq Alam, Muhammad Asad Khan, Umair ul Hassan, Imdadullah Khan
Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node Classifiers. Big Data (2022)
Prakash Chourasia, Sarwan Ali, Murray Patterson
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences. CoRR (2022)
Sarwan Ali
Evaluating COVID-19 Sequence Data Using Nearest-Neighbors Based Network Model. CoRR (2022)
Sarwan Ali, Taslim Murad, Prakash Chourasia, Murray Patterson
Spike2Signal: Classifying Coronavirus Spike Sequences with Deep Learning. BigDataService (2022)
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdadullah Khan, Murray Patterson
Efficient Approximate Kernel Based Spike Sequence Classification. CoRR (2022)
Prakash Chourasia, Sarwan Ali, Murray Patterson
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences. Big Data (2022)
Taslim Murad, Prakash Chourasia, Sarwan Ali, Murray Patterson
Hashing2Vec: Fast Embedding Generation for SARS-CoV-2 Spike Sequence Classification. ACML (2022)
Sarwan Ali
Information We Can Extract About a User From 'One Minute Mobile Application Usage'. CoRR (2022)
Sarwan Ali, Taslim Murad, Murray Patterson
PSSM2Vec: A Compact Alignment-Free Embedding Approach for Coronavirus Spike Sequence Classification. ICONIP (7) (2022)
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data. CoRR (2022)
Sarwan Ali, Muhammad Ahmad, Umair ul Hassan, Muhammad Asad Khan, Shafiq Alam, Imdadullah Khan
Efficient Data Analytics on Augmented Similarity Triplets. Big Data (2022)
Sarwan Ali, Babatunde Bello, Prakash Chourasia, Ria Thazhe Punathil, Yijing Zhou, Murray Patterson
PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences. CoRR (2022)
Haris Mansoor, Sarwan Ali, Shafiq Alam, Muhammad Asad Khan, Umair ul Hassan, Imdadullah Khan
Impact Of Missing Data Imputation On The Fairness And Accuracy Of Graph Node Classifiers. CoRR (2022)
Sarwan Ali, Bikram Sahoo, Alexander Zelikovskiy, Pin-Yu Chen, Murray Patterson
Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classification. CoRR (2022)
Sarwan Ali, Babatunde Bello, Murray Patterson
Classifying COVID-19 Spike Sequences from Geographic Location Using Deep Learning. CoRR (2021)
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data. ICCABS (2021)
Sarwan Ali, Bikram Sahoo, Naimat Ullah, Alexander Zelikovskiy, Murray Patterson, Imdadullah Khan
A k-mer Based Approach for SARS-CoV-2 Variant Identification. ISBRA (2021)
Zahra Tayebi, Sarwan Ali, Murray Patterson
Robust Representation and Efficient Feature Selection Allows for Effective Clustering of SARS-CoV-2 Variants. CoRR (2021)
Sarwan Ali, Murray Patterson
Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences. IEEE BigData (2021)
Sarwan Ali, Murray Patterson
Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences. CoRR (2021)
Inaam Ul Hassan, Abdul Haseeb, Sarwan Ali
Locally Weighted Mean Phase Angle (LWMPA) Based Tone Mapping Quality Index (TMQI-3). CoRR (2021)
Sarwan Ali, Yijing Zhou, Murray Patterson
Efficient Analysis of COVID-19 Clinical Data using Machine Learning Models. CoRR (2021)
Zahra Tayebi, Sarwan Ali, Murray Patterson
Robust Representation and Efficient Feature Selection Allows for Effective Clustering of SARS-CoV-2 Variants. Algorithms 14 (12) (2021)
Sarwan Ali, Tamkanat E. Ali, Muhammad Asad Khan, Imdadullah Khan, Murray Patterson
Effective and scalable clustering of SARS-CoV-2 sequences. CoRR (2021)
Sarwan Ali, Muhammad Haroon Shakeel, Imdadullah Khan, Safiullah Faizullah, Muhammad Asad Khan
Predicting Attributes of Nodes Using Network Structure. ACM Trans. Intell. Syst. Technol. 12 (2) (2021)
Sarwan Ali, Bikram Sahoo, Naimat Ullah, Alexander Zelikovskiy, Murray Patterson, Imdadullah Khan
A k-mer Based Approach for SARS-CoV-2 Variant Identification. CoRR (2021)
Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella, Gianluca Della Vedova, Murray Patterson
Simpler and Faster Development of Tumor Phylogeny Pipelines. J. Comput. Biol. 28 (11) (2021)
Sarwan Ali
Cache Replacement Algorithm. CoRR (2021)
Muhammad Ahmad, Sarwan Ali, Juvaria Tariq, Imdadullah Khan, Mudassir Shabbir, Arif Zaman
Combinatorial trace method for network immunization. Inf. Sci. 519 (2020)
Sarwan Ali, Haris Mansoor, Imdadullah Khan, Naveed Arshad, Safiullah Faizullah, Muhammad Asad Khan
Fair Allocation Based Soft Load Shedding. IntelliSys (2) (2020)
Asad Ullah, Sarwan Ali, Imdadullah Khan, Muhammad Asad Khan, Safiullah Faizullah
Effect of Analysis Window and Feature Selection on Classification of Hand Movements Using EMG Signal. IntelliSys (3) (2020)
Asad Ullah, Sarwan Ali, Imdadullah Khan, Muhammad Asad Khan, Safiullah Faizullah
Effect of Analysis Window and Feature Selection on Classification of Hand Movements Using EMG Signal. CoRR (2020)
Muhammad Ahmad, Sarwan Ali, Juvaria Tariq, Imdadullah Khan, Mudassir Shabbir, Arif Zaman
Combinatorial Trace Method for Network Immunization. CoRR (2019)
Muhammad Ahmad, Muhammad Haroon Shakeel, Sarwan Ali, Imdadullah Khan, Arif Zaman, Asim Karim
Efficient Data Analytics on Augmented Similarity Triplets. CoRR (2019)
Sarwan Ali, Haris Mansoor, Naveed Arshad, Imdadullah Khan
Short Term Load Forecasting using Smart Meter Data. e-Energy (2019)
Sarwan Ali, Haris Mansoor, Imdadullah Khan, Naveed Arshad, Muhammad Asad Khan, Safiullah Faizullah
Hour-Ahead Load Forecasting Using AMI Data. CoRR (2019)
Abdullah M. Alshanqiti, Safi Faizullah, Sarwan Ali, Maria Khalid Alvi, Muhammad Asad Khan, Imdadullah Khan
Detecting DDoS Attack on SDN Due to Vulnerabilities in OpenFlow. CoRR (2019)
Sarwan Ali, Muhammad Haroon Shakeel, Imdadullah Khan, Safiullah Faizullah, Muhammad Asad Khan
Predicting Attributes of Nodes Using Network Structure. CoRR (2019)