Alexander Zelikovsky

ORCID

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 27

Top Venues

J. Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

BCB

ICCABS

Publications

Fatemeh Mohebbi, Alexander Zelikovsky, Serghei Mangul, Gerardo Chowell, Pavel Skums
Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes. RECOMB (2024)
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
18th International Symposium on Bioinformatics Research and Applications (ISBRA 2022). J. Comput. Biol. 30 (8) (2023)
Zahra Tayebi, Akshay Juyal, Alexander Zelikovsky, Murray Patterson
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs. ISBRA (2023)
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdadullah Khan, Murray Patterson
Efficient Approximate Kernel Based Spike Sequence Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021). J. Comput. Biol. 30 (4) (2023)
Hafsa Farooq, Daniel Novikov, Akshay Juyal, Alexander Zelikovsky
Genetic Algorithm with Evolutionary Jumps. ISBRA (2023)
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdadullah Khan, Murray Patterson
Efficient Approximate Kernel Based Spike Sequence Classification. CoRR (2022)
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
17th International Symposium on Bioinformatics Research and Applications (ISBRA 2021). J. Comput. Biol. 29 (10) (2022)
Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019). J. Comput. Biol. 28 (2) (2021)
Zhipeng Cai, Pavel Skums, Yuri Porozov, Alexander Zelikovsky
Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020). J. Comput. Biol. 28 (7) (2021)
Bikram Sahoo, Seth Sims, Alexander Zelikovsky
An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer. ICCABS (2021)
Zhipeng Cai, Pavel Skums, Yuri Porozov, Alexander Zelikovsky
Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020). J. Comput. Biol. 28 (8) (2021)
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. 28 (8) (2021)
Sumit Kumar Jha, Ion I. Mandoiu, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020). J. Comput. Biol. 28 (11) (2021)
Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era. Briefings Bioinform. 22 (1) (2021)
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
Preface Special Issue: 15th International Symposium on Bioinformatics Research and Applications (ISBRA 2019). J. Comput. Biol. 27 (2) (2020)
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
Preface: 14th International Symposium on Bioinformatics Research and Applications (ISBRA 2018). J. Comput. Biol. 26 (8) (2019)
Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
Workshop on Computational Advances in Molecular Epidemiology. BCB (2019)
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome. BCB (2018)
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky
Preface: 13th International Symposium on BioinformaticsResearch and Applications (ISBRA 2017). J. Comput. Biol. 25 (3) (2018)
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
Automated quality control for a molecular surveillance system. BMC Bioinform. (11) (2018)
Sunitha Basodi, Pelin Burcak Icer, Pavel Skums, Yury Khudyakov, Alexander Zelikovsky, Yi Pan
Classification of HCV infections through sequence image normalization. ICCABS (2017)
Robert W. Harrison, Ion I. Mandoiu, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (3) (2017)
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology. BCB (2017)
Zhipeng Cai, Alexander Zelikovsky
Computing and Combinatorics. Algorithmica 76 (4) (2016)
Zhipeng Cai, Alexander Zelikovsky
Special issue on Computing and Combinatorics Conference. Theor. Comput. Sci. 609 (2016)
Ning Yu, Xuan Guo, Alexander Zelikovsky, Yi Pan
GaussianCpG: A Gaussian model for detection of human CpG island. ICCABS (2015)
James Lindsay, Hamed Salooti, Ion I. Mandoiu, Alexander Zelikovsky
ILP-based maximum likelihood genome scaffolding. BMC Bioinform. 15 (S-9) (2014)
Ion I. Mandoiu, Jianxin Wang, Alexander Zelikovsky
Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Thamer Alsulaiman, Sushil K. Prasad, Alexander Zelikovsky
Distributed Algorithms for TDMA Link Scheduling in Sensor Networks. Int. J. Netw. Comput. 3 (1) (2013)
Jianer Chen, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution. ICCABS (2012)
James Lindsay, Ion I. Mandoiu, Hamed Salooti, Alexander Zelikovsky
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming. ICCABS (2012)
Gruia Calinescu, Cristina G. Fernandes, Hemanshu Kaul, Alexander Zelikovsky
Maximum Series-Parallel Subgraph. Algorithmica 63 (1-2) (2012)
Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alexander Zelikovsky
Workshop: A maximum likelihood method for quasispecies spectrum assembly. ICCABS (2012)
Thamer Alsulaiman, Sushil K. Prasad, Alexander Zelikovsky
Distributed Algorithms for TDMA Link Scheduling in Sensor Networks. IPDPS Workshops (2012)
Jianer Chen, Ion I. Mandoiu, Raj Sunderraman, Jianxin Wang, Alexander Zelikovsky
Guest Editors' Introduction. BMC Bioinform. 13 (S-10) (2012)
Rachel J. O'Neill, Ion I. Mandoiu, Mazhar I. Khan, Craig Obergfell, Hongjun Wang, Andrew Bligh, Bassam Tork, Nicholas Mancuso, Alexander Zelikovsky
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data. ICCABS (2012)
James Lindsay, Hamed Salooti, Alexander Zelikovsky, Ion I. Mandoiu
Scalable genome scaffolding using integer linear programming. BCB (2012)
James Lindsay, J. Zhang, T. Farnham, Y. Wu, Ion I. Mandoiu, Rachel J. O'Neill, Hamed Salooti, E. Bullwinkel, Alexander Zelikovsky
Poster: Scaffolding draft genomes using paired sequencing data. ICCABS (2011)
Serghei Mangul, Alexander Zelikovsky
Poster: Haplotype discovery from high-throughput sequencing data. ICCABS (2011)
Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky
Optimal Testing of Digital Microfluidic Biochips. INFORMS J. Comput. 23 (4) (2011)
Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes. BIBM Workshops (2011)
Serghei Mangul, Irina Astrovskaya, Marius Nicolae, Bassam Tork, Ion I. Mandoiu, Alexander Zelikovsky
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data. WABI (2011)
Mark Borodovsky, Teresa M. Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (4) (2011)
Alexander Zelikovsky
Invited: Metabolic network alignments. ICCABS (2011)
Nicholas Mancuso, Bassam Tork, Pavel Skums, Ion I. Mandoiu, Alexander Zelikovsky
Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads. BIBM Workshops (2011)
Qiong Cheng, Alexander Zelikovsky
Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications. Int. J. Knowl. Discov. Bioinform. 2 (1) (2011)
Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alexander Zelikovsky
Poster: ViSpA: Viral spectrum assembling method. ICCABS (2011)
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
A 3/2-Approximation Algorithm for Generalized Steiner Trees in Complete Graphs with Edge Lengths 1 and 2. ISAAC (1) (2010)
Qiong Cheng, Mitsunori Ogihara, Jinpeng Wei, Alexander Zelikovsky
WS-GraphMatching: a web service tool for graph matching. CIKM (2010)
Qiong Cheng, Jinpeng Wei, Alexander Zelikovsky, Mitsunori Ogihara
Fixed-Parameter Tractable Combinatorial Algorithms for Metabolic Networks Alignments. ICDM Workshops (2010)
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data. WABI (2010)
Qiong Cheng, Piotr Berman, Robert W. Harrison, Alexander Zelikovsky
Efficient Alignments of Metabolic Networks with Bounded Treewidth. ICDM Workshops (2010)
Stefan Gremalschi, Gulsah Altun, Irina Astrovskaya, Alexander Zelikovsky
Mean Square Residue Biclustering with Missing Data and Row Inversions. ISBRA (2009)
Qiong Cheng, Robert W. Harrison, Alexander Zelikovsky
MetNetAligner: a web service tool for metabolic network alignments. Bioinform. 25 (15) (2009)
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
1.25-Approximation Algorithm for Steiner Tree Problem with Distances 1 and 2. WADS (2009)
Irina Astrovskaya, Alexander Zelikovsky
Genotype Tagging with Limited Overfitting. BSB (2009)
Ion I. Mandoiu, Yi Pan, Raj Sunderraman, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (2) (2009)
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
1.25 Approximation Algorithm for the Steiner Tree Problem with Distances One and Two CoRR (2008)
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
1.25 Approximation Algorithm for the Steiner Tree Problem with Distances One and Two. Electron. Colloquium Comput. Complex. 15 (094) (2008)
Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (3) (2008)
Piotr Berman, Marek Karpinski, Alexander Zelikovsky
A Factor 3/2 Approximation for Generalized Steiner Tree Problem with Distances One and Two CoRR (2008)
Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky
HCV Quasispecies Assembly Using Network Flows. ISBRA (2008)
Qiong Cheng, Piotr Berman, Robert W. Harrison, Alexander Zelikovsky
Fast Alignments of Metabolic Networks. BIBM (2008)
Dumitru Brinza, Alexander Zelikovsky
Design and Validation of Methods Searching for Risk Factors in Genotype Case-Control Studies. J. Comput. Biol. 15 (1) (2008)
Dumitru Brinza, Alexander Zelikovsky
2SNP: Scalable Phasing Method for Trios and Unrelated Individuals. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (2) (2008)
Qiong Cheng, Robert W. Harrison, Alexander Zelikovsky
Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways. BIBE (2007)
Andrew B. Kahng, Ion I. Mandoiu, Xu Xu, Alexander Zelikovsky
Enhanced Design Flow and Optimizations for Multiproject Wafers. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 26 (2) (2007)
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. J. Comput. Biol. 14 (7) (2007)
Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky, Marius Zimand
Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks. J. Univers. Comput. Sci. 13 (1) (2007)
Dumitru Brinza, Alexander Zelikovsky
Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies. BIBE (2007)
Dumitru Brinza, Alexander Zelikovsky
Risk Factor Searching Heuristics for SNP Case-Control Studies. BIBM (2007)
Nisar Hundewale, Sunsook Jung, Alexander Zelikovsky
Energy Efficient Node Caching and Load Balancing Enhancement of Reactive Ad Hoc Routing Protocols. J. Univers. Comput. Sci. 13 (1) (2007)
Charles C. Chiang, Andrew B. Kahng, Subarna Sinha, Xu Xu, Alexander Zelikovsky
Fast and Efficient Bright-Field AAPSM Conflict Detection and Correction. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 26 (1) (2007)
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. WABI (2007)
Charles C. Chiang, Andrew B. Kahng, Subarna Sinha, Xu Xu, Alexander Zelikovsky
Bright-Field AAPSM Conflict Detection and Correction CoRR (2007)
Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (4) (2007)
Weidong Mao, Dumitru Brinza, Nisar Hundewale, Stefan Gremalschi, Alexander Zelikovsky
Genotype susceptibility and integrated risk factors for complex diseases. GrC (2006)
Dumitru Brinza, Alexander Zelikovsky
2SNP: scalable phasing based on 2-SNP haplotypes. Bioinform. 22 (3) (2006)
Piotr Berman, Martin Fürer, Alexander Zelikovsky
Applications of the Linear Matroid Parity Algorithm to Approximating Steiner Trees. CSR (2006)
Jingwu He, Jun Zhang, Gulsah Altun, Alexander Zelikovsky, Yanqing Zhang
Haplotype tagging using support vector machines. GrC (2006)
Dumitru Brinza, Jingwu He, Alexander Zelikovsky
Combinatorial Search Methods for Multi-SNP Disease Association. EMBC (2006)
Gulsah Altun, Hae-Jin Hu, Dumitru Brinza, Robert W. Harrison, Alexander Zelikovsky, Yi Pan
Hybrid SVM Kernels for Protein Secondary Structure Prediction. GrC (2006)
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
Computer-Aided Optimization of DNA Array Design and Manufacturing. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 25 (2) (2006)
Akshaye Dhawan, Chinh T. Vu, Alexander Zelikovsky, Yingshu Li, Sushil K. Prasad
Maximum Lifetime of Sensor Networks with Adjustable Sensing Range. SNPD (2006)
Dumitru Brinza, Alexander Zelikovsky
Phasing of 2-SNP Genotypes Based on Non-random Mating Model. International Conference on Computational Science (2) (2006)
Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky
Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks. Wirel. Networks 12 (3) (2006)
Dumitru Brinza, Alexander Zelikovsky
DEEPS: Deterministic Energy-Efficient Protocol for Sensor networks. SNPD (2006)
Andrew B. Kahng, Puneet Sharma, Alexander Zelikovsky
Fill for shallow trench isolation CMP. ICCAD (2006)
Jingwu He, Alexander Zelikovsky
MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression. Bioinform. 22 (20) (2006)
Jingwu He, Alexander Zelikovsky
Tag SNP Selection Based on Multivariate Linear Regression. International Conference on Computational Science (2) (2006)
Dumitru Brinza, Alexander Zelikovsky
Combinatorial Methods for Disease Association Search and Susceptibility Prediction. WABI (2006)
Gruia Calinescu, Alexander Zelikovsky
The Polymatroid Steiner Problems. J. Comb. Optim. 9 (3) (2005)
Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky
Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem. Algorithmica 42 (2) (2005)
Sunsook Jung, Nisar Hundewale, Alexander Zelikovsky
GKM over large MANET. SNPD (2005)
Gabriel Robins, Alexander Zelikovsky
Tighter Bounds for Graph Steiner Tree Approximation. SIAM J. Discret. Math. 19 (1) (2005)
Yu Chen, Andrew B. Kahng, Gabriel Robins, Alexander Zelikovsky, Yuhong Zheng
Compressible area fill synthesis. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 24 (8) (2005)
Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
Multicommodity Flow Algorithms for Buffered Global Routing CoRR (2005)

Alexander Zelikovsky.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Alexander Zelikovsky