Yury Khudyakov

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 20

Top Topics

Efficient Search

Hepatitis C Virus

Top Venues

Publications

Yaroslav Zharov, Yury Khudyakov, Evgeniia Fedotova, Evgeny Grigorenko, Egor Bogomolov
Tool-Augmented LLMs as a Universal Interface for IDEs. CoRR (2024)
David S. Campo, Alexander Mosa, Yury Khudyakov
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences. J. Comput. Biol. 30 (4) (2023)
Walker Gussler, David S. Campo, Zoya Dimitrova, Pavel Skums, Yury Khudyakov
Primary case inference in viral outbreaks through analysis of intra-host variant population. BMC Bioinform. 23 (1) (2022)
Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer, Sumathi Ramachandran, Yury Khudyakov
SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework. RECOMB (2022)
David S. Campo, Yury Khudyakov
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences. BMC Bioinform. (18) (2020)
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
Workshop on Computational Advances in Molecular Epidemiology. BCB (2019)
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome. BCB (2018)
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. 34 (1) (2018)
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
Automated quality control for a molecular surveillance system. BMC Bioinform. (11) (2018)
Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. BMC Bioinform. (11) (2018)
Pelin Icer Baykal, Alexander Artyomenko, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky, Pavel Skums
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning. ICCABS (2017)
Sunitha Basodi, Pelin Burcak Icer, Pavel Skums, Yury Khudyakov, Alexander Zelikovsky, Yi Pan
Classification of HCV infections through sequence image normalization. ICCABS (2017)
Deeptanshu Jha, Pavel Skums, Alex Zelikovsky, Yury Khudyakov, Rahul Singh
Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media. ISBRA (2017)
Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets. ICCABS (2017)
Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky
Agent-Based in Silico Evolution of HCV Quasispecies. ISBRA (2017)
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology. BCB (2017)
Xiaojun Xu, Hong Thai, Kathryn M. Kitrinos, Guo-liang Xia, Anuj Gaggar, Matthew Paulson, Lilia Ganova-Raeva, Yury Khudyakov, James Lara
Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction. BMC Bioinform. 17 (S-8) (2016)
James Lara, Yury Khudyakov, Livia Rossi, Gilberto Vaughan
Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks. ICCABS (2015)
Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue
Efficient detection of viral transmission with threshold-based methods. ICCABS (2015)
Pavel Skums, Olga Glebova, David S. Campo, Nana Li, Zoya Dimitrova, Seth Sims, Leonid Bunimovich, Alex Zelikovsky, Yury Khudyakov
Algorithms for prediction of viral transmission using analysis of intra-host viral populations. ICCABS (2015)