Alexander Artyomenko

Publication Activity (10 Years)

Years Active: 2013-2017
Publications (10 Years): 6

Top Topics

Machine Learning

Closely Related

Regression Algorithm

Reconstruction Process

Top Venues

J. Comput. Biol.

Publications

Pelin Icer Baykal, Alexander Artyomenko, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky, Pavel Skums
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning. ICCABS (2017)
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. J. Comput. Biol. 24 (6) (2017)
Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky
Agent-Based in Silico Evolution of HCV Quasispecies. ISBRA (2017)
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. RECOMB (2016)
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky
2SNV: Quasispecies reconstruction from PacBio reads. ICCABS (2015)
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinform. 31 (5) (2015)
Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data. ICCABS (2014)
Alexander Artyomenko, Serghei Mangul, Nicholas C. Wu, Eleazar Eskin, Ren Sun, Alex Zelikovsky
Reconstruction of influenza a virus variants from PacBio reads. ICCABS (2014)
Adrian Caciula, Olga Glebova, Alexander Artyomenko, Serghei Mangul, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky
Deterministic regression algorithm for transcriptome frequency estimation. ICCABS (2014)
Alexander Artyomenko, Nicholas Mancuso, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu
kGEM: An EM-based algorithm for local reconstruction of viral quasispecies. ICCABS (2013)
Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion I. Mandoiu, Yuri Khudyakov, Alex Zelikovsky
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. BMC Bioinform. 14 (S-9) (2013)
Nicholas Mancuso, Alexander Artyomenko, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu
Estimation of viral population structure from amplicon-based reads. ICCABS (2013)