David S. Campo

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 10

Top Topics

High Throughput Technologies

Computational Framework

Top Venues

J. Comput. Biol.

Publications

David S. Campo, Alexander Mosa, Yury Khudyakov
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences. J. Comput. Biol. 30 (4) (2023)
Walker Gussler, David S. Campo, Zoya Dimitrova, Pavel Skums, Yury Khudyakov
Primary case inference in viral outbreaks through analysis of intra-host variant population. BMC Bioinform. 23 (1) (2022)
David S. Campo, Yury Khudyakov
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences. BMC Bioinform. (18) (2020)
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. 34 (1) (2018)
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
Automated quality control for a molecular surveillance system. BMC Bioinform. (11) (2018)
Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. BMC Bioinform. (11) (2018)
Viachaslau Tsyvina, David S. Campo, Seth Sims, Alex Zelikovsky, Yury Khudyakov, Pavel Skums
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets. ICCABS (2017)
Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue
Efficient detection of viral transmission with threshold-based methods. ICCABS (2015)
Pavel Skums, Olga Glebova, David S. Campo, Nana Li, Zoya Dimitrova, Seth Sims, Leonid Bunimovich, Alex Zelikovsky, Yury Khudyakov
Algorithms for prediction of viral transmission using analysis of intra-host viral populations. ICCABS (2015)
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinform. 31 (5) (2015)
David S. Campo, Zoya Dimitrova, Guo-liang Xia, Pavel Skums, Lilia Ganova-Raeva, Yuri Khudyakov
New computational methods for assessing the genetic relatedness of close viral variants. ICCABS (2014)
Pavel Skums, Alexander Artyomenko, Olga Glebova, Alex Zelikovsky, David S. Campo, Zoya Dimitrova, Yuri Khudyakov
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data. ICCABS (2014)
Pavel Skums, David S. Campo, Zoya Dimitrova, Leonid Bunimovich, Yuri Khudyakov
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies. ICCABS (2013)
David S. Campo, Zoya Dimitrova, Pavel Skums, Yuri Khudyakov
Mutational robustness of hepatitis C virus intra-host variants. ICCABS (2013)
Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. Silico Biol. 11 (5-6) (2012)
David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
Coordinated evolution of the Hepatitis B Virus Polymerase. Silico Biol. 11 (5-6) (2012)
Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili
Differences in variability of hypervariable region 1 of hepatitis C virus (HCV) between acute and chronic stages of HCV infection. Silico Biol. 11 (5-6) (2012)
Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov
Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response. Silico Biol. 11 (5-6) (2012)
Pavel Skums, Zoya Dimitrova, David S. Campo, Gilberto Vaughan, Livia Rossi, Joseph C. Forbi, Jonny Yokosawa, Alex Zelikovsky, Yuri Khudyakov
Efficient error correction for next-generation sequencing of viral amplicons. BMC Bioinform. 13 (S-10) (2012)
Irina V. Astrakhantseva, David S. Campo, Aufra Araujo, Chong-Gee Teo, Yuri Khudyakov, Saleem Kamili
Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection. BIBM Workshops (2011)
David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
Network of coordinated substitutions in the Hepatitis B virus polymerase. BIBM Workshops (2011)
Pavel Skums, David S. Campo, Zoya Dimitrova, Gilberto Vaughan, Daryl T. Lau, Yuri Khudyakov
Modelling differential interferon resistance of HCV quasispecies. BIBM Workshops (2011)
Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. BIBM Workshops (2011)
David S. Campo, Zoya Dimitrova, Yuri Khudyakov
Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure. ISBRA (2008)
Kelly Westbrooks, Irina Astrovskaya, David S. Campo, Yuri Khudyakov, Piotr Berman, Alexander Zelikovsky
HCV Quasispecies Assembly Using Network Flows. ISBRA (2008)