Sriram P. Chockalingam

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 20

Top Topics

Global Alignment

Sequence Analysis

Top Venues

Publications

Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru
A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery. IEEE Trans. Parallel Distributed Syst. 34 (6) (2023)
Maneesha Aluru, Harsh Shrivastava, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks. Bioinform. 38 (5) (2022)
Ankit Srivastava, Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru
Parallel construction of module networks. SC (2021)
Sriram P. Chockalingam, Jodh Pannu, Sahar Hooshmand, Sharma V. Thankachan, Srinivas Aluru
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction. BMC Bioinform. (6) (2020)
Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru
A parallel framework for constraint-based bayesian network learning via markov blanket discovery. SC (2020)
Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru
Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings. J. Parallel Distributed Comput. 144 (2020)
Jodh Pannu, Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru
An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction. BCB (2018)
Md. Vasimuddin, Sriram P. Chockalingam, Srinivas Aluru
A Parallel Algorithm for Bayesian Network Inference Using Arithmetic Circuits. IPDPS (2018)
Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru
Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis. RECOMB (2018)
Sriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru
Reverse Engineering Gene Networks: A Comparative Study at Genome-scale. BCB (2017)
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru
A greedy alignment-free distance estimator for phylogenetic inference. BMC Bioinform. 18 (8) (2017)
Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses. BCB (2017)
Rahul Nihalani, Sriram P. Chockalingam, Shaowei Zhu, Vijay V. Vazirani, Srinivas Aluru
Probabilistic estimation of overlap graphs for large sequence datasets. BIBM (2017)
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Alberto Apostolico, Srinivas Aluru
ALFRED: A Practical Method for Alignment-Free Distance Computation. J. Comput. Biol. 23 (6) (2016)
Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru
-mismatch maximal common substrings. SC (2016)
Sharma V. Thankachan, Sriram P. Chockalingam, Srinivas Aluru
An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings. ISBRA (2016)
Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru
Parallel Read Error Correction for Big Genomic Datasets. HiPC (2015)
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru
A greedy alignment-free distance estimator for phylogenetic inference (extended abstract). ICCABS (2015)
Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue
Efficient detection of viral transmission with threshold-based methods. ICCABS (2015)
Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru
Information Theory Based Genome-Scale Gene Networks Construction Using MapReduce. HiPC (2015)
Sanchit Misra, Md. Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru
Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks. SC (2014)
Xiao Yang, Sriram P. Chockalingam, Srinivas Aluru
A survey of error-correction methods for next-generation sequencing. Briefings Bioinform. 14 (1) (2013)
Ankit Shah, Sriram P. Chockalingam, Srinivas Aluru
A Parallel Algorithm for Spectrum-based Short Read Error Correction. IPDPS (2012)