An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction.
Sriram P. ChockalingamJodh PannuSahar HooshmandSharma V. ThankachanSrinivas AluruPublished in: BMC Bioinform. (2020)
Keyphrases
- multiple sequence alignment
- multiple sequence alignments
- sequence alignment
- three dimensional
- multiple alignment
- optimal solution
- global alignment
- rna sequences
- search algorithm
- dynamic time warping
- phylogenetic trees
- genetic algorithm
- reconstruction method
- biological sequences
- image alignment
- computational biology
- protein sequences
- image reconstruction
- compressed sensing
- combinatorial optimization
- sequence analysis
- tabu search
- x ray
- evolutionary algorithm
- volume reconstruction