An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction.
Jodh PannuSriram P. ChockalingamSharma V. ThankachanSrinivas AluruPublished in: BCB (2018)
Keyphrases
- multiple sequence alignment
- multiple sequence alignments
- phylogenetic trees
- sequence alignment
- three dimensional
- global alignment
- multiple alignment
- search algorithm
- compressed sensing
- simulated annealing
- rna sequences
- optimal solution
- biological sequences
- discrete tomography
- neural network
- image reconstruction
- dynamic programming
- high resolution
- reconstruction error
- greedy heuristic
- image alignment
- sequence data
- tabu search
- pairwise
- genetic algorithm