Sumathi Ramachandran

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 6

Top Topics

Omni Directional

Computational Framework

Quality Control

Top Venues

Publications

Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer, Sumathi Ramachandran, Yury Khudyakov
SOPHIE: Viral Outbreak Investigation and Transmission History Reconstruction in a Joint Phylogenetic and Network Theory Framework. RECOMB (2022)
Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. 34 (1) (2018)
Seth Sims, Atkinson G. Longmire, David S. Campo, Sumathi Ramachandran, Magdalena Medrzycki, Lilia Ganova-Raeva, Yulin Lin, Amanda Sue, Hong Thai, Alexander Zelikovsky, Yury Khudyakov
Automated quality control for a molecular surveillance system. BMC Bioinform. (11) (2018)
Pelin Icer Baykal, Alexander Artyomenko, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky, Pavel Skums
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning. ICCABS (2017)
Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky
Agent-Based in Silico Evolution of HCV Quasispecies. ISBRA (2017)
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinform. 31 (5) (2015)
Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. Silico Biol. 11 (5-6) (2012)
David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
Coordinated evolution of the Hepatitis B Virus Polymerase. Silico Biol. 11 (5-6) (2012)
David S. Campo, Zoya Dimitrova, James Lara, Mike Purdy, Hong Thai, Sumathi Ramachandran, Lilia Ganova-Raeva, X. Zhai, Joseph C. Forbi, Chong-Gee Teo, Yuri Khudyakov
Network of coordinated substitutions in the Hepatitis B virus polymerase. BIBM Workshops (2011)
Zoya Dimitrova, David S. Campo, Sumathi Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, Yulin Lin, Joseph C. Forbi, Guo-liang Xia, Pavel Skums, Brian L. Pearlman, Yuri Khudyakov
Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. BIBM Workshops (2011)