Jean-Fred Fontaine

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 4

Top Topics

Technical Papers

Drosophila Melanogaster

Protein Interaction

Top Venues

Nucleic Acids Res.

Publications

Maximilian Sprang, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality. BMC Bioinform. 23 (1) (2022)
Piyush More, Laura Bindila, Philipp Wild, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
LipiDisease: associate lipids to diseases using literature mining. Bioinform. 37 (21) (2021)
Michael Sadovsky, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Yury Yakubailik, Natalia Rudenko
Lost Strings in Genomes: What Sense Do They Make? IWBBIO (2) (2017)
Marco Frasca, Jean-Fred Fontaine, Giorgio Valentini, Marco Mesiti, Marco Notaro, Dario Malchiodi, Miguel A. Andrade-Navarro
Disease-Genes Must Guide Data Source Integration in the Gene Prioritization Process. CIBB (2017)
Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz
CellFinder: a cell data repository. Nucleic Acids Res. 42 (Database-Issue) (2014)
José A. Gijón-Correas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
Alkemio: association of chemicals with biomedical topics by text and data mining. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Stefanie Seltmann, Harald Stachelscheid, Alexander Damaschun, Ludger Jansen, Fritz Lekschas, Jean-Fred Fontaine, Throng-Nghia Nguyen-Dobinsky, Ulf Leser, Andreas Kurtz
CELDA - an ontology for the comprehensive representation of cells in complex systems. BMC Bioinform. 14 (2013)
Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. PLoS Comput. Biol. 9 (1) (2013)
Mariana L. Neves, Alexander Damaschun, Nancy Mah, Fritz Lekschas, Stefanie Seltmann, Harald Stachelscheid, Jean-Fred Fontaine, Andreas Kurtz, Ulf Leser
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. Database J. Biol. Databases Curation 2013 (2013)
Francisco M. Ortuño Guzman, Ignacio Rojas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
Using cited references to improve the retrieval of related biomedical documents. BMC Bioinform. 14 (2013)
Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases. Bioinform. 27 (17) (2011)
Jean-Fred Fontaine, Florian Priller, Adriano Barbosa-Silva, Miguel A. Andrade-Navarro
Génie: literature-based gene prioritization at multi genomic scale. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Adriano Barbosa-Silva, Jean-Fred Fontaine, Elisa R. Donnard, Fernanda Stussi, José Miguel Ortega, Miguel A. Andrade-Navarro
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries. BMC Bioinform. 12 (2011)
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinform. 11 (2010)
Jean-Fred Fontaine, Adriano Barbosa-Silva, Martin H. Schaefer, Matthew R. Huska, Enrique M. Muro, Miguel A. Andrade-Navarro
MedlineRanker: flexible ranking of biomedical literature. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
André Lambert, Matthieu Legendre, Jean-Fred Fontaine, Daniel Gautheret
Computing expectation values for RNA motifs using discrete convolutions. BMC Bioinform. 6 (2005)
André Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, Daniel Gautheret
The ERPIN server: an interface to profile-based RNA motif identification. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)