PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments.
Federico ZambelliGraziano PesoleGiulio PavesiPublished in: Nucleic Acids Res. (2013)
Keyphrases
- transcription factors
- transcription factor binding sites
- binding sites
- highly correlated
- microarray
- dna sequences
- gene expression
- genome wide
- component analysis
- computational biology
- motif discovery
- biological sequences
- dna binding
- systems biology
- gene regulation
- sequence alignment
- regulatory elements
- co occurrence
- genome sequences
- regulatory networks
- high throughput
- machine learning
- sequence data
- sequential patterns
- sequence patterns
- statistical significance
- average precision
- biomedical literature
- statistically significant
- natural language processing
- social networks