Barry Demchak

Publication Activity (10 Years)

Years Active: 2006-2019
Publications (10 Years): 8

Top Topics

Distributed Network

Semantically Enhanced

Projection Matrices

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Julia A. Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
RCy3: Network biology using Cytoscape from within R. F1000Research 8 (2019)
Brett Settle, David Otasek, John H. Morris, Barry Demchak
Copycat Layout: Network layout alignment via Cytoscape Automation. F1000Research 7 (2018)
Barry Demchak, David Otasek, Alexander R. Pico, Gary D. Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H. Morris, William J. R. Longabaugh, Christian Tannus Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker
The Cytoscape Automation app article collection. F1000Research 7 (2018)
Brett Settle, David Otasek, John H. Morris, Barry Demchak
aMatReader: Importing adjacency matrices via Cytoscape Automation. F1000Research 7 (2018)
Daniel E. Carlin, Barry Demchak, Dexter Pratt, Eric Sage, Trey Ideker
Network propagation in the cytoscape cyberinfrastructure. PLoS Comput. Biol. 13 (10) (2017)
Braxton Fitts, Ziran Zhang, Massoud Maher, Barry Demchak
dot-app: a Graphviz-Cytoscape conversion plug-in. F1000Research 5 (2016)
Georg Summer, Thomas Kelder, Keiichiro Ono, Marijana Radonjic, Stephane Heymans, Barry Demchak
cyNeo4j: connecting Neo4j and Cytoscape. Bioinform. 31 (23) (2015)
Keiichiro Ono, Tanja Muetze, Georgi Kolishovski, Paul Shannon, Barry Demchak
CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Research 4 (2015)
Keiichiro Ono, Barry Demchak, Trey Ideker
Cytoscape tools for the web age: D3.js and Cytoscape.js exporters. F1000Research 3 (2014)
David Welker, Barry Demchak
Porting and using PanGIA for Cytoscape 3: challenges and solutions. F1000Research 3 (2014)
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov
Cytoscape: the network visualization tool for GenomeSpace workflows. F1000Research 3 (2014)
Alexander R. Pico, Gary D. Bader, Barry Demchak, Oriol Guitart Pla, Timothy Hull, William J. R. Longabaugh, Christian Tannus Lopes, Samad Lotia, Piet Molenaar, Jason Montojo, John H. Morris, Keiichiro Ono, Benno Schwikowski, David Welker, Trey Ideker
The Cytoscape app article collection. F1000Research 3 (2014)
Janusz Dutkowski, Keiichiro Ono, Michael Kramer, Michael Yu, Dexter Pratt, Barry Demchak, Trey Ideker
NeXO Web: the NeXO ontology database and visualization platform. Nucleic Acids Res. 42 (Database-Issue) (2014)
Barry Demchak, Jacqueline Kerr, Fred Raab, Kevin Patrick, Ingolf H. Krüger
PALMS: A Modern Coevolution of Community and Computing Using Policy Driven Development. HICSS (2012)
Barry Demchak, Ingolf Krüger
Policy Driven Development: Flexible Policy Insertion for Large Scale Systems. POLICY (2012)
Ingolf Krüger, Barry Demchak, Massimiliano Menarini
Dynamic Service Composition and Deployment with OpenRichServices. Software Service and Application Engineering (2012)
Barry Demchak, Vina Ermagan, Claudiu Farcas, Emilia Farcas, Ingolf H. Krüger, Massimiliano Menarini
Rich services: addressing challenges of ultra-large-scale software-intensive systems. ULSSIS@ICSE (2008)
Barry Demchak, Vina Ermagan, Emilia Farcas, To-ju Huang, Ingolf H. Krüger, Massimiliano Menarini
A Rich Services Approach to CoCoME. CoCoME (2007)
Barry Demchak, William G. Griswold, Leslie A. Lenert
Data Quality for Situational Awareness during Mass-Casualty Events. AMIA (2007)
Barry Demchak, Claudiu Farcas, Emilia Farcas, Ingolf H. Krüger
The Treasure Map for Rich Services. IRI (2007)
Matthew Arrott, Barry Demchak, Vina Ermagan, Claudiu Farcas, Emilia Farcas, Ingolf H. Krüger, Massimiliano Menarini
Rich Services: The Integration Piece of the SOA Puzzle. ICWS (2007)
Barry Demchak, Theodore C. Chan, William G. Griswold, Leslie Lenert
Situational Awareness During Mass-Casualty Events: Command and Control. AMIA (2006)
Steven W. Brown, William G. Griswold, Barry Demchak, Leslie A. Lenert
Middleware for Reliable Mobile Medical Workflow Support in Disaster Settings. AMIA (2006)