Benno Schwikowski

Publication Activity (10 Years)

Years Active: 1996-2022
Publications (10 Years): 5

Top Topics

Association Studies

Top Venues

Briefings Bioinform.

Publications

Farzaneh Firoozbakht, Behnam Yousefi, Benno Schwikowski
An overview of machine learning methods for monotherapy drug response prediction. Briefings Bioinform. 23 (1) (2022)
Barry Demchak, David Otasek, Alexander R. Pico, Gary D. Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H. Morris, William J. R. Longabaugh, Christian Tannus Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker
The Cytoscape Automation app article collection. F1000Research 7 (2018)
Frederik Gwinner, Gwénola Boulday, Claire Vandiedonck, Minh Arnould, Cécile Cardoso, Iryna Nikolayeva, Oriol Guitart-Pla, Cécile V. Denis, Olivier D. Christophe, Johann Beghain, Elisabeth Tournier-Lasserve, Benno Schwikowski
Network-based analysis of omics data: the LEAN method. Bioinform. 33 (5) (2017)
Cheikh Loucoubar, Audrey V. Grant, Jean-François Bureau, Isabelle Casademont, Ndjido Ardo Bar, Avner Bar-Hen, Mamadou Diop, Joseph Faye, Fatoumata Diene Sarr, Abdoulaye Badiane, Adama Tall, Jean-François Trape, Freddy Cliquet, Benno Schwikowski, Mark Lathrop, Richard Edward Paul, Anavaj Sakuntabhai
Detecting multi-way epistasis in family-based association studies. Briefings Bioinform. 18 (3) (2017)
Oriol Guitart-Pla, Manjunath Kustagi, Frank Rügheimer, Andrea Califano, Benno Schwikowski
The Cyni framework for network inference in Cytoscape. Bioinform. 31 (9) (2015)
Alexander R. Pico, Gary D. Bader, Barry Demchak, Oriol Guitart Pla, Timothy Hull, William J. R. Longabaugh, Christian Tannus Lopes, Samad Lotia, Piet Molenaar, Jason Montojo, John H. Morris, Keiichiro Ono, Benno Schwikowski, David Welker, Trey Ideker
The Cytoscape app article collection. F1000Research 3 (2014)
Laura Elo, Benno Schwikowski
Mining proteomic data for biomedical research. WIREs Data Mining Knowl. Discov. 2 (1) (2012)
Sébastien Li-Thiao-Té, Benno Schwikowski
Feature Detection with Controlled Error Rates in LC/MS Images. J. Comput. Biol. 19 (4) (2012)
Søren Besenbacher, Benno Schwikowski, Jens Stoye
Indexing and Searching a Mass Spectrometry Database. Algorithms and Applications (2010)
Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck
Evolution of metabolic network organization. BMC Syst. Biol. 4 (2010)
Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck
Phylogenetic distances are encoded in networks of interacting pathways. Bioinform. 24 (22) (2008)
Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinform. 23 (3) (2007)
Tero Aittokallio, Benno Schwikowski
Graph-based methods for analysing networks in cell biology. Briefings Bioinform. 7 (3) (2006)
David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection. BMC Bioinform. 6 (2005)
Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini
Towards Optimally Multiplexed Applications of Universal Arrays. J. Comput. Biol. 11 (2/3) (2004)
David J. Reiss, Benno Schwikowski
Predicting protein-peptide interactions via a network-based motif sampler. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini
Towards optimally multiplexed applications of universal DNA tag systems. RECOMB (2003)
Benno Schwikowski, Martin Vingron
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discret. Appl. Math. 127 (1) (2003)
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir
The Restriction Scaffold Problem. J. Comput. Biol. 10 (3/4) (2003)
Benno Schwikowski, Ewald Speckenmeyer
On enumerating all minimal solutions of feedback problems. Discret. Appl. Math. 117 (1-3) (2002)
Mathieu Blanchette, Benno Schwikowski, Martin Tompa
Algorithms for Phylogenetic Footprinting. J. Comput. Biol. 9 (2) (2002)
Benno Schwikowski
Algorithmic Challenges in Mass Spectrometry and Systems Biology. GI Jahrestagung (Ergänzungsband) (2002)
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir
The restriction scaffold problem. RECOMB (2002)
Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel
Discovering regulatory and signalling circuits in molecular interaction networks. ISMB (2002)
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini
Universal DNA tag systems: a combinatorial design scheme. RECOMB (2000)
Mathieu Blanchette, Benno Schwikowski, Martin Tompa
An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. ISMB (2000)
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini
Universal DNA Tag Systems: A Combinatorial Design Scheme. J. Comput. Biol. 7 (3-4) (2000)
Benno Schwikowski, Martin Vingron
The Deferred Path Heuristic for the Generalized Tree Alignment Problem. J. Comput. Biol. 4 (3) (1997)
Benno Schwikowski, Martin Vingron
The deferred path heuristic for the generalized tree alignment problem. RECOMB (1997)
Benno Schwikowski, Martin Vingron
A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. German Conference on Bioinformatics - Selected Papers (1996)
Benno Schwikowski, Martin Vingron
Attacking Generalized tree Alignment by a Deferred Path Heuristic. German Conference on Bioinformatics (1996)