Melissa S. Cline

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 3

Top Topics

Computational Framework

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

J. Am. Medical Informatics Assoc.

Publications

James Casaletto, Melissa S. Cline, Brian H. Shirts
Modeling the impact of data sharing on variant classification. J. Am. Medical Informatics Assoc. 30 (3) (2023)
Alex H. Wagner, Lawrence J. Babb, Melissa S. Cline, Helen Schuilenburg, Tristan Nelson, Robert R. Freimuth, Reece Hart
The GA4GH Variation Representation Specification (VRS): a Computational Framework for the Precise Representation of Molecular Variation. AMIA (2021)
Shan Yang, Melissa S. Cline, Can Zhang, Benedict Paten, Stephen E. Lincoln
Data Sharing and Reproducible Clinical Genetic Testing: Successes and Challenges. PSB (2017)
Mary Goldman, Brian Craft, Teresa Swatloski, Melissa S. Cline, Olena Morozova, Mark Diekhans, David Haussler, Jingchun Zhu
The UCSC Cancer Genomics Browser: update 2015. Nucleic Acids Res. 43 (Database-Issue) (2015)
Inbal Paz, Idit Kosti, Manuel Ares, Melissa S. Cline, Yael Mandel-Gutfreund
RBPmap: a web server for mapping binding sites of RNA-binding proteins. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Donna Karolchik, Galt P. Barber, Jonathan Casper, Hiram Clawson, Melissa S. Cline, Mark Diekhans, Timothy R. Dreszer, Pauline A. Fujita, Luvina Guruvadoo, Maximilian Haeussler, Rachel A. Harte, Steven G. Heitner, Angie S. Hinrichs, Katrina Learned, Brian T. Lee, Chin H. Li, Brian J. Raney, Brooke L. Rhead, Kate R. Rosenbloom, Cricket A. Sloan, Matthew L. Speir, Ann S. Zweig, David Haussler, Robert M. Kuhn, W. James Kent
The UCSC Genome Browser database: 2014 update. Nucleic Acids Res. 42 (Database-Issue) (2014)
Christopher Wilks, Melissa S. Cline, Erich Weiler, Mark Diekhans, Brian Craft, Christy Martin, Daniel Murphy, Howdy Pierce, John Black, Donavan Nelson, Brian Litzinger, Thomas Hatton, Lori Maltbie, Michael Ainsworth, Patrick Allen, Linda Rosewood, Elizabeth Mitchell, Bradley Smith, Jim Warner, John Groboske, Haifang Telc, Daniel Wilson, Brian Sanford, Hannes Schmidt, David Haussler, Daniel Maltbie
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Database J. Biol. Databases Curation 2014 (2014)
Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu
The UCSC Cancer Genomics Browser: update 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
Laurence R. Meyer, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Robert M. Kuhn, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Venkat S. Malladi, Chin H. Li, Brian T. Lee, Katrina Learned, Vanessa Kirkup, Fan Hsu, Steven G. Heitner, Rachel A. Harte, Maximilian Haeussler, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Timothy R. Dreszer, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent
The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
Timothy R. Dreszer, Donna Karolchik, Ann S. Zweig, Angie S. Hinrichs, Brian J. Raney, Robert M. Kuhn, Laurence R. Meyer, Matthew C. Wong, Cricket A. Sloan, Kate R. Rosenbloom, Greg Roe, Brooke L. Rhead, Andy Pohl, Venkat S. Malladi, Chin H. Li, Katrina Learned, Vanessa Kirkup, Fan Hsu, Rachel A. Harte, Luvina Guruvadoo, Mary Goldman, Belinda Giardine, Pauline A. Fujita, Mark Diekhans, Melissa S. Cline, Hiram Clawson, Galt P. Barber, David Haussler, W. James Kent
The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Res. 40 (Database-Issue) (2012)
Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long, Venkat S. Malladi, Cricket A. Sloan, Brian J. Raney, Melissa S. Cline, Donna Karolchik, Galt P. Barber, Hiram Clawson, Mark Diekhans, Pauline A. Fujita, Mary Goldman, Robert C. Gravell, Rachel A. Harte, Angie S. Hinrichs, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Morgan Maddren, Laurence R. Meyer, Andy Pohl, Brooke L. Rhead, Matthew C. Wong, Ann S. Zweig, David Haussler, W. James Kent
ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res. 40 (Database-Issue) (2012)
Brian J. Raney, Melissa S. Cline, Kate R. Rosenbloom, Timothy R. Dreszer, Katrina Learned, Galt P. Barber, Laurence R. Meyer, Cricket A. Sloan, Venkat S. Malladi, Krishna M. Roskin, Bernard B. Suh, Angie S. Hinrichs, Hiram Clawson, Ann S. Zweig, Vanessa Kirkup, Pauline A. Fujita, Brooke L. Rhead, Kayla E. Smith, Andy Pohl, Robert M. Kuhn, Donna Karolchik, David Haussler, W. James Kent
ENCODE whole-genome data in the UCSC genome browser (2011 update). Nucleic Acids Res. 39 (Database-Issue) (2011)
Melissa S. Cline, Rachel Karchin
Using bioinformatics to predict the functional impact of SNVs. Bioinform. 27 (4) (2011)
Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, Angie S. Hinrichs, Donna Karolchik, Melissa S. Cline, Mary Goldman, Galt P. Barber, Hiram Clawson, Antonio Coelho, Mark Diekhans, Timothy R. Dreszer, Belinda Giardine, Rachel A. Harte, Jennifer Hillman-Jackson, Fan Hsu, Vanessa Kirkup, Robert M. Kuhn, Katrina Learned, Chin H. Li, Laurence R. Meyer, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Kayla E. Smith, David Haussler, W. James Kent
The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 39 (Database-Issue) (2011)
Andrew A. Pohl, Charles W. Sugnet, Tyson Clark, Kayla E. Smith, Pauline A. Fujita, Melissa S. Cline
Affy exon tissues: exon levels in normal tissues in human, mouse and rat. Bioinform. 25 (18) (2009)
Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel, Thomas Lengauer, Mario Albrecht
Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks. J. Integr. Bioinform. 5 (2) (2008)
Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht
Integrating expression data with domain interaction networks. Bioinform. 24 (21) (2008)
Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinform. 23 (3) (2007)
Charles W. Sugnet, Karpagam Srinivasan, Tyson Clark, Georgeann O'Brien, Melissa S. Cline, Hui Wang, Alan Williams, David Kulp, John Blume, David Haussler, Manuel Ares
Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays. PLoS Comput. Biol. 2 (1) (2006)
Melissa S. Cline, John Blume, Simon Cawley, Tyson Clark, Jing-Shan Hu, Gang Lu, Nathan Salomonis, Hui Wang, Alan Williams
ANOSVA: a statistical method for detecting splice variation from expression data. ISMB (Supplement of Bioinformatics) (2005)
Melissa S. Cline, Ron Shigeta, Raymond Wheeler, Michael A. Siani-Rose, David Kulp, Ann E. Loraine
The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome. Pacific Symposium on Biocomputing (2004)
Ron Shigeta, Melissa S. Cline, Guoying Liu, Michael A. Siani-Rose
GPCR-GRAPA-LIB-a refined library of hidden Markov Models for annotating GPCRs. Bioinform. 19 (5) (2003)
Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose
Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro. J. Bioinform. Comput. Biol. 1 (2) (2003)
Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose
NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res. 31 (1) (2003)
Hui Wang, Earl Hubbell, Jing-Shan Hu, Gangwu Mei, Melissa S. Cline, Gang Lu, Tyson Clark, Michael A. Siani-Rose, Manuel Ares, David Kulp, David Haussler
Gene structure-based splice variant deconvolution using a microarry platform. ISMB (Supplement of Bioinformatics) (2003)
Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose
Protein-Based Analysis of Alternative Splicing in the Human Genome. CSB (2002)
Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose
Structure-Based Comparison of Four Eukaryotic Genomes. Pacific Symposium on Biocomputing (2002)
Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose
NetAffx: affymetrix probeset annotations. SAC (2002)
Melissa S. Cline, Richard Hughey, Kevin Karplus
Predicting reliable regions in protein sequence alignments. Bioinform. 18 (2) (2002)