Ann E. Loraine

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 4

Top Topics

Web Application Development

Alternative Splicing

High Throughput

Top Venues

Frontiers Bioinform.

Publications

Karthik Raveendran, Nowlan H. Freese, Chaitanya Kintali, Srishti Tiwari, Pawan Bole, Chester Dias, Ann E. Loraine
BioViz Connect: Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser. Frontiers Bioinform. 2 (2022)
Sameer Shanbhag, Riddhi Patil, Noor Zahara, Chirag Shetty, Rachel Weidenhammer, Sneha Watharkar, Pranav Tambvekar, Philip P. Badzuh, Chester Dias, Narendra Vankayala, Prutha Kulkarni, Charan Vallapureddy, Shamika Kulkarni, Pooja Nikhare, Nowlan H. Freese, Ann E. Loraine
Integrated Genome Browser App Store. Bioinform. 38 (8) (2022)
Tarun Mall, John Eckstein, David C. Norris, Hiral Vora, Nowlan H. Freese, Ann E. Loraine
ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins. Bioinform. 32 (16) (2016)
Nowlan H. Freese, David C. Norris, Ann E. Loraine
Integrated genome browser: visual analytics platform for genomics. Bioinform. 32 (14) (2016)
Ruolin Liu, Ann E. Loraine, Julie A. Dickerson
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems. BMC Bioinform. 15 (2014)
Gregg A. Helt, John W. Nicol, Ed Erwin, Eric Blossom, Steven G. Blanchard Jr., Stephen A. Chervitz, Cyrus L. Harmon, Ann E. Loraine
Genoviz Software Development Kit: Java tool kit for building genomics visualization applications. BMC Bioinform. 10 (2009)
John W. Nicol, Gregg A. Helt, Steven G. Blanchard Jr., Archana Raja, Ann E. Loraine
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinform. 25 (20) (2009)
Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung Sam Hung, Ann E. Loraine, Stanley J. Roux
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient. BMC Bioinform. 9 (2008)
Ann E. Loraine
Bioinformatics, Genomics, and Proteomics: Getting the Big Picture (Biotechnology in the 21st Century): Ann Finney Batiza. Briefings Bioinform. 9 (1) (2008)
Ann E. Loraine, Mari L. Salmi, Stephen C. Stout, Stanley J. Roux
Gene-Ontology-based analysis of gene expression changes in early development of Ceratopteris spores. CSB Workshops (2005)
Melissa S. Cline, Ron Shigeta, Raymond Wheeler, Michael A. Siani-Rose, David Kulp, Ann E. Loraine
The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome. Pacific Symposium on Biocomputing (2004)
Boris Budagyan, Ann E. Loraine
Gene Length and Alternative Transcription in Fruit Fly. CSB (2004)
Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose
Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro. J. Bioinform. Comput. Biol. 1 (2) (2003)
Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose
NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res. 31 (1) (2003)
Ann E. Loraine, Gregg A. Helt
Visualization Techniques for Genomic Data. CSB (2002)
Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose
Protein-Based Analysis of Alternative Splicing in the Human Genome. CSB (2002)
Melissa S. Cline, Guoying Liu, Ann E. Loraine, Ron Shigeta, Jill Cheng, Gangwu Mei, David Kulp, Michael A. Siani-Rose
Structure-Based Comparison of Four Eukaryotic Genomes. Pacific Symposium on Biocomputing (2002)
Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Stephen A. Chervitz, David Kulp, Michael A. Siani-Rose
NetAffx: affymetrix probeset annotations. SAC (2002)
Ann E. Loraine, Gregg A. Helt
Visualizing the genome: techniques for presenting human genome data and annotations. BMC Bioinform. 3 (2002)