Julie A. Dickerson

Publication Activity (10 Years)

Years Active: 1993-2017
Publications (10 Years): 3

Top Topics

Computational Methods

Alternative Splicing

Class Dependent

Top Venues

BMC Syst. Biol.

Nucleic Acids Res.

Publications

Ruolin Liu, Julie A. Dickerson
Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq. PLoS Comput. Biol. 13 (11) (2017)
Gaurav Kandoi, Julie A. Dickerson
Differential alternative splicing patterns with differential expression to computationally extract plant molecular pathways. BIBM (2017)
Jesse R. Walsh, Mary L. Schaeffer, Peifen Zhang, Seung Yon Rhee, Julie A. Dickerson, Taner Z. Sen
The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. BMC Syst. Biol. 10 (2016)
William Eric Marsh, Jonathan W. Kelly, Julie A. Dickerson, James H. Oliver
Fuzzy Navigation Engine: Mitigating the Cognitive Demands of Semi-Natural Locomotion. Presence Teleoperators Virtual Environ. 23 (3) (2014)
Jesse R. Walsh, Taner Z. Sen, Julie A. Dickerson
A computational platform to maintain and migrate manual functional annotations for BioCyc databases. BMC Syst. Biol. 8 (2014)
Ruolin Liu, Ann E. Loraine, Julie A. Dickerson
Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems. BMC Bioinform. 15 (2014)
Wengang Zhou, Julie A. Dickerson
A novel class dependent feature selection method for cancer biomarker discovery. Comput. Biol. Medicine 47 (2014)
Jesse R. Walsh, Julie A. Dickerson
Semi-automated Constraint-based Metabolic Model Generation. BCB (2013)
Ruolin Liu, Julie A. Dickerson
Computational methods for alternative splicing detection using RNA-seq. BCB (2013)
Divya Mistry, Julie A. Dickerson
Incorporating Gene Annotations as Node Metadata to Improve Network Centrality Measures for Better Node Ranking. BCB (2013)
Preeti Bais, Stephanie M. Moon-Quanbeck, Basil J. Nikolau, Julie A. Dickerson
metabolomics - database and tools update. Nucleic Acids Res. 40 (Database-Issue) (2012)
Tian Xia, Jiansong Tong, Shailendra S. Rathore, Xun Gu, Julie A. Dickerson
Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis. BMC Syst. Biol. 6 (2012)
Wengang Zhou, Julie A. Dickerson
StruLocPred: structure-based protein subcellular localisation prediction using multi-class support vector machine. Int. J. Data Min. Bioinform. 6 (2) (2012)
John L. Van Hemert, Julie A. Dickerson
Discriminating response groups in metabolic and regulatory pathway networks. Bioinform. 28 (7) (2012)
Sudhansu Dash, John L. Van Hemert, Lu Hong, Roger P. Wise, Julie A. Dickerson
PLEXdb: gene expression resources for plants and plant pathogens. Nucleic Acids Res. 40 (Database-Issue) (2012)
Yao Fu, Laura R. Jarboe, Julie A. Dickerson
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities. BMC Bioinform. 12 (2011)
John L. Van Hemert, Julie A. Dickerson
Monte Carlo randomization tests for large-scale abundance datasets on the GPU. Comput. Methods Programs Biomed. 101 (1) (2011)
Tian Xia, John L. Van Hemert, Julie A. Dickerson
CytoModeler: a tool for bridging large-scale network analysis and dynamic quantitative modeling. Bioinform. 27 (11) (2011)
Tian Xia, John L. Van Hemert, Julie A. Dickerson
OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data. Bioinform. 26 (23) (2010)
Yao Fu, Laura R. Jarboe, Julie A. Dickerson
Gene Regulatory Network Reconstruction Based on Gene Expression and Transcription Factor Activities. BIOCOMP (2010)
Ming Jia, Suh-Yeon Choi, Dirk Reiners, Eve Syrkin Wurtele, Julie A. Dickerson
MetNetGE: interactive views of biological networks and ontologies. BMC Bioinform. 11 (2010)
John L. Van Hemert, Julie A. Dickerson
PathwayAccess: CellDesigner plugins for pathway databases. Bioinform. 26 (18) (2010)
Ming Jia, Ling Li, Erin Boggess, Eve Syrkin Wurtele, Julie A. Dickerson
Visualizing Multivariate Hierarchic Data Using Enhanced Radial Space-Filling Layout. ISVC (1) (2010)
Shubhalaxmi Kher, Julie A. Dickerson, Neelam Rawat
Biological pathway data integration trends, techniques, issues and challenges: A survey. NaBIC (2010)
Muhieddine El Kaissi, Ming Jia, Dirk Reiners, Julie A. Dickerson, Eve Wuertele
Reaction Centric Layout for Metabolic Networks. ISVC (2) (2009)
Muhieddine El Kaissi, Ming Jia, Dirk Reiners, Julie A. Dickerson, Eve Wuertele
Visualization of Gene Regulatory Networks. ISVC (2) (2009)
Linyong Mao, John L. Van Hemert, Sudhansu Dash, Julie A. Dickerson
gene co-expression network and its functional modules. BMC Bioinform. 10 (2009)
Tian Xia, Julie A. Dickerson
OmicsViz: Cytoscape plug-in for visualizing omics data across species. Bioinform. 24 (21) (2008)
Ming Jia, Shaozhi Ye, Xing Li, Julie A. Dickerson
Web Site Recommendation Using HTTP Traffic. ICDM (2007)
Wen Zhou, Tian Xia, Jiansong Tong, Julie A. Dickerson, Bo Su, Xun Gu
Modeling protein interaction network and mechanisms in exocytosis. BIBE (2007)
Yuting Yang, Eve Syrkin Wurtele, Carolina Cruz-Neira, Julie A. Dickerson
Hierarchical visualization of metabolic networks using virtual reality. VRCIA (2006)
Jianqiang Xin, Linfeng Zhang, Brad Aswegan, John Dickerson, Julie A. Dickerson, Thomas E. Daniels, Yong Guan
A testbed for evaluation and analysis of stepping stone attack attribution techniques. TRIDENTCOM (2006)
Yuting Yang, Levent Engin, Eve Syrkin Wurtele, Carolina Cruz-Neira, Julie A. Dickerson
Integration of metabolic networks and gene expression in virtual reality. Bioinform. 21 (18) (2005)
Jing Ding, Karthikeyan Viswanathan, Daniel Berleant, Laron M. Hughes, Eve Syrkin Wurtele, Daniel A. Ashlock, Julie A. Dickerson, Andy W. Fulmer, Patrick S. Schnable
Using the biological taxonomy to access biological literature with PathBinderH. Bioinform. 21 (10) (2005)
Lishuang Shen, Jian Gong, Rico A. Caldo, Dan Nettleton, Dianne Cook, Roger P. Wise, Julie A. Dickerson
BarleyBase - an expression profiling database for plant genomics. Nucleic Acids Res. 33 (Database-Issue) (2005)
Pan Du, Jian Gong, Eve Syrkin Wurtele, Julie A. Dickerson
Modeling gene expression networks using fuzzy logic. IEEE Trans. Syst. Man Cybern. Part B 35 (6) (2005)
Xiaoyun Tang, Lishuang Shen, Julie A. Dickerson
BarleyExpress: a web-based submission tool for enriched microarray database annotations. Bioinform. 21 (3) (2005)
Galen Faidley, Jayme Hero, Kukjin Lee, Bernard Lwakabamba, Robert D. Walstrom, Feng Chen, Julie A. Dickerson, Diane T. Rover, Robert J. Weber, Carolina Cruz-Neira
Developing an Integrated Wireless System for Fully Immersive Virtual Reality Environments. ISWC (2004)
Jianqiang Xin, John E. Dickerson, Julie A. Dickerson
Fuzzy feature extraction and visualization for intrusion detection. FUZZ-IEEE (2003)
Julie A. Dickerson, J. Hong, Z. Cox, D. Bailey
A comparison of radial basis function networks and fuzzy neural logic networks for autonomous star recognition. IJCNN (1999)
Hyun Mun Kim, Julie A. Dickerson, Bart Kosko
Fuzzy throttle and brake control for platoons of smart cars. Fuzzy Sets Syst. 84 (3) (1996)
Julie A. Dickerson, Bart Kosko
Fuzzy function approximation with ellipsoidal rules. IEEE Trans. Syst. Man Cybern. Part B 26 (4) (1996)
Julie A. Dickerson, Bart Kosko
Virtual Worlds as Fuzzy Cognitive Maps. Presence Teleoperators Virtual Environ. 3 (2) (1994)
Julie A. Dickerson, Bart Kosko
Virtual Worlds as Fuzzy Cognitive Maps. VRAIS (1993)
Julie A. Dickerson, Bart Kosko
Fuzzy function learning with covariance ellipsoids. ICNN (1993)