Baozhen Shan

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 10

Top Topics

Weakly Supervised

Highest Resolution

Feature Detection

Top Venues

Nat. Mach. Intell.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Fang Han, Baozhen Shan, Kaizhong Zhang
De novo sequencing of multiple SILAC-based tandem mass spectra. ICCI*CC (2022)
Rui Qiao, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices. Nat. Mach. Intell. 3 (5) (2021)
Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li
ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (4) (2021)
Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan, Ming Li
PointIso: Point Cloud Based Deep Learning Model for Detecting Arbitrary-Precision Peptide Features in LC-MS Map through Attention Based Segmentation. CoRR (2020)
Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. Nat. Mach. Intell. 2 (12) (2020)
Rui Qiao, Ngoc Hieu Tran, Ming Li, Lei Xin, Baozhen Shan, Ali Ghodsi
DeepNovoV2: Better de novo peptide sequencing with deep learning. CoRR (2019)
Fatema Tuz Zohora, Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
DeepIso: A Deep Learning Model for Peptide Feature Detection. CoRR (2018)
Ngoc Hieu Tran, Zachariah Levine, Lei Xin, Baozhen Shan, Ming Li
Protein identification with deep learning: from abc to xyz. CoRR (2017)
Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang
DISC: DISulfide linkage Characterization from tandem mass spectra. Bioinform. 33 (23) (2017)
Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li
De novo peptide sequencing by deep learning. Proc. Natl. Acad. Sci. USA 114 (31) (2017)
Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma
Better score function for peptide identification with ETD MS/MS spectra. BMC Bioinform. 11 (S-1) (2010)
Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. 6 (1) (2008)
Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie
Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC (2007)
Baozhen Shan
Stochastic Context-Free Graph Grammars for Glycoprotein Modelling. CIAA (2004)
Lucian Ilie, Baozhen Shan, Sheng Yu
Fast Algorithms for Extended Regular Expression Matching and Searching. STACS (2003)