Determining Protein Structures from NOESY Distance Constraints by Semidefinite Programming.
Babak AlipanahiNathan KrislockAli GhodsiHenry WolkowiczLogan DonaldsonMing LiPublished in: J. Comput. Biol. (2013)
Keyphrases
- semidefinite programming
- protein structure
- linear programming
- protein structure alignment
- semidefinite
- interior point methods
- kernel matrix
- primal dual
- euclidean distance
- maximum margin
- protein sequences
- constrained optimization
- secondary structure
- distance measure
- amino acids
- nuclear magnetic resonance
- support vectors
- optimal solution
- linear program
- least squares
- dynamic programming
- high dimensional