Daniel H. Huson

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 16

Top Topics

Interactive Exploration

Multimodal Data

Functional Analysis

Machine Learning

Top Venues

Frontiers Bioinform.

Publications

Wenhuan Zeng, Daniel H. Huson
Leverage the Explainability of Transformer Models to Improve the DNA 5-Methylcytosine Identification (Student Abstract). AAAI (2024)
Anupam Gautam, Debaleena Bhowmik, Sayantani Basu, Wenhuan Zeng, Abhishake Lahiri, Daniel H. Huson, Sandip Paul
Microbiome Metabolome Integration Platform (MMIP): a web-based platform for microbiome and metabolome data integration and feature identification. Briefings Bioinform. 24 (6) (2023)
Anupam Gautam, Wenhuan Zeng, Daniel H. Huson
MeganServer: facilitating interactive access to metagenomic data on a server. Bioinform. 39 (3) (2023)
David Bryant, Daniel H. Huson
NeighborNet: improved algorithms and implementation. Frontiers Bioinform. 3 (2023)
Daniel H. Huson, Banu Cetinkaya
Visualizing incompatibilities in phylogenetic trees using consensus outlines. Frontiers Bioinform. 3 (2023)
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
DeepToA: an ensemble deep-learning approach to predicting the theater of activity of a microbiome. Bioinform. 38 (20) (2022)
Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson
Tegula - exploring a galaxy of two-dimensional periodic tilings. Comput. Aided Geom. Des. 90 (2021)
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19. Comput. 9 (1) (2021)
Benjamin Albrecht, Caner Bagci, Daniel H. Huson
MAIRA- real-time taxonomic and functional analysis of long reads on a laptop. BMC Bioinform. (13) (2020)
Rüdiger Zeller, Olaf Delgado-Friedrichs, Daniel H. Huson
Tegula - exploring a galaxy of two-dimensional periodic tilings. CoRR (2020)
Daniel H. Huson, Simone Linz
Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Anna Górska, Silke Peter, Matthias Willmann, Ingo Autenrieth, Robert Schlaberg, Daniel H. Huson
Dynamics of the human gut phageome during antibiotic treatment. Comput. Biol. Chem. 74 (2018)
Monika Balvociute, Daniel H. Huson
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare? BMC Genom. 18 (S2) (2017)
Mohammad Alanjary, Brent Kronmiller, Martina Adamek, Kai Blin, Tilmann Weber, Daniel H. Huson, Benjamin Philmus, Nadine Ziemert
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Chao Xie, Chin Lui Wesley Goi, Daniel H. Huson, Peter F. R. Little, Rohan B. H. Williams
RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys. BMC Bioinform. 17 (S-19) (2016)
Daniel H. Huson, Sina Beier, Isabell Flade, Anna Górska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joachim Ruscheweyh, Rewati Tappu
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. PLoS Comput. Biol. 12 (6) (2016)
Daniel H. Huson, Chao Xie
A poor man's BLASTX - high-throughput metagenomic protein database search using PAUDA. Bioinform. 30 (1) (2014)
Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson
Fast computation of minimum hybridization networks. Bioinform. 28 (2) (2012)
Céline Scornavacca, Franziska Zickmann, Daniel H. Huson
Tanglegrams for rooted phylogenetic trees and networks. Bioinform. 27 (13) (2011)
Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinform. 12 (S-1) (2011)
Suparna Mitra, Max Schubach, Daniel H. Huson
Short clones or long clones? A simulation study on the use of paired reads in metagenomics. BMC Bioinform. 11 (S-1) (2010)
Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H. Huson
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters. Bioinform. 26 (12) (2010)
Johannes Fischer, Daniel H. Huson
New common ancestor problems in trees and directed acyclic graphs. Inf. Process. Lett. 110 (8-9) (2010)
Daniel H. Huson
Drawing Rooted Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (1) (2009)
Suparna Mitra, Bernhard Klar, Daniel H. Huson
Visual and statistical comparison of metagenomes. Bioinform. 25 (15) (2009)
Daniel H. Huson, Vincent Moulton, Mike A. Steel
Special Section: Phylogenetics. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (1) (2009)
Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster
Methods for comparative metagenomics. BMC Bioinform. 10 (S-1) (2009)
Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul
Computing galled networks from real data. Bioinform. 25 (12) (2009)
Philippe Gambette, Daniel H. Huson
Improved Layout of Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (3) (2008)
Daniel H. Huson, Regula Rupp
Summarizing Multiple Gene Trees Using Cluster Networks. WABI (2008)
Daniel H. Huson, Tobias H. Klöpper
Beyond Galled Trees - Decomposition and Computation of Galled Networks. RECOMB (2007)
Jan P. Meier-Kolthoff, Alexander F. Auch, Daniel H. Huson, Markus Göker
COPYCAT : cophylogenetic analysis tool. Bioinform. 23 (7) (2007)
Daniel H. Huson, Daniel C. Richter, Christian Rausch, Tobias Dezulian, Markus Franz, Regula Rupp
Dendroscope: An interactive viewer for large phylogenetic trees. BMC Bioinform. 8 (2007)
Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson
OSLay: optimal syntenic layout of unfinished assemblies. Bioinform. 23 (13) (2007)
Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster
etagenome Analysis using Megan. APBC (2007)
Tobias Dezulian, Martin H. Schaefer, Roland Wiese, Detlef Weigel, Daniel H. Huson
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Daniel H. Huson, Mike A. Steel, Jim Whitfield
Reducing Distortion in Phylogenetic Networks. WABI (2006)
Tobias Dezulian, Michael Remmert, Javier F. Palatnik, Detlef Weigel, Daniel H. Huson
Identification of plant microRNA homologs. Bioinform. 22 (3) (2006)
Daniel H. Huson, Tobias H. Klöpper, Pete J. Lockhart, Mike A. Steel
Reconstruction of Reticulate Networks from Gene Trees. RECOMB (2005)
Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster
Whole-genome prokaryotic phylogeny. Bioinform. 21 (10) (2005)
Daniel H. Huson, Tobias H. Klöpper
Computing recombination networks from binary sequences. ECCB/JBI (2005)
Kristoffer Forslund, Daniel H. Huson, Vincent Moulton
VisRD--visual recombination detection. Bioinform. 20 (18) (2004)
Andreas W. M. Dress, Daniel H. Huson
Constructing Splits Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 1 (3) (2004)
Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel
Phylogenetic Super-networks from Partial Trees. WABI (2004)
Olaf Delgado-Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson
Syntenic Layout of Two Assemblies of Related Genomes. German Conference on Bioinformatics (2004)
Daniel H. Huson, Mike A. Steel
Phylogenetic trees based on gene content. Bioinform. 20 (13) (2004)
Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel
Phylogenetic Super-Networks from Partial Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 1 (4) (2004)
Olaf Delgado-Friedrichs, Tobias Dezulian, Daniel H. Huson
A meta-viewer for biomolecular data. GI Jahrestagung (1) (2003)
David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe
Distance Corrections on Recombinant Sequences. WABI (2003)
Aaron L. Halpern, Daniel H. Huson, Knut Reinert
Segment Match Refinement and Applications. WABI (2002)
Daniel H. Huson, Knut Reinert, Eugene W. Myers
The greedy path-merging algorithm for contig scaffolding. J. ACM 49 (5) (2002)
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers
Design of a compartmentalized shotgun assembler for the human genome. ISMB (Supplement of Bioinformatics) (2001)
Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton
Comparing Assemblies Using Fragments and Mate-Pairs. WABI (2001)
Russell J. Turner, Kabir Chaturvedi, Nathan Edwards, Daniel P. Fasulo, Aaron L. Halpern, Daniel H. Huson, Oliver Kohlbacher, Jason R. Miller, Knut Reinert, Karin A. Remington, Russell Schwartz, Brian Walenz, Shibu Yooseph, Sorin Istrail
Visualization challenges for a new cyberpharmaceutical computing paradigm. IEEE Symposium on Parallel and Large-Data Visualization and Graphics (2001)
Daniel H. Huson, Knut Reinert, Eugene W. Myers
The greedy path-merging algorithm for sequence assembly. RECOMB (2001)
Vineet Bafna, Daniel H. Huson
The Conserved Exon Method for Gene Finding. ISMB (2000)
Olaf Delgado-Friedrichs, Daniel H. Huson
. Discret. Comput. Geom. 24 (2-3) (2000)
Daniel H. Huson, Lisa Vawter, Tandy J. Warnow
Solving Large Scale Phylogenetic Problems using DCM2. ISMB (1999)
Daniel H. Huson, Kelly Ann Smith, Tandy J. Warnow
Estimating Large Distances in Phylogenetic Reconstruction. WAE (1999)
Daniel H. Huson, Scott Nettles, Tandy J. Warnow
Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction. J. Comput. Biol. 6 (3/4) (1999)
Daniel H. Huson, Scott Nettles, Tandy J. Warnow
Obtaining highly accurate topology estimates of evolutionary trees from very short sequences. RECOMB (1999)
Olaf Delgado-Friedrichs, Daniel H. Huson
Tiling Space by Platonic Solids, I. Discret. Comput. Geom. 21 (2) (1999)
Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph
Hybrid Tree Reconstruction Methods. ACM J. Exp. Algorithmics 4 (1999)
Daniel H. Huson
SplitsTree: analyzing and visualizing evolutionary data. Bioinform. 14 (1) (1998)
Nikolai P. Dolbilin, Andreas W. M. Dress, Daniel H. Huson
Two Finiteness Theorems for Periodic Tilings of d-Dimensional Euclidean Space. Discret. Comput. Geom. 20 (2) (1998)
Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy J. Warnow, Shibu Yooseph
Hybrid Tree Reconstruction Methods. WAE (1998)
Andreas W. M. Dress, Daniel H. Huson, Vincent Moulton
Analyzing and Visualizing Sequence and Distance Data Using SplitsTree. Discret. Appl. Math. 71 (1-3) (1996)
Daniel H. Huson
Visualization of Periodic Tilings. VisMath (1995)
Reinhard Franz, Daniel H. Huson
The Classification of Quasi-Regular Polyhedra of Genus 2. Discret. Comput. Geom. 7 (1992)