Vincent Daubin

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 4

Top Topics

Maximum Parsimony

Gene Duplication

Top Venues

PLoS Comput. Biol.

Publications

Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. Bioinform. 38 (8) (2022)
Hugo Menet, Vincent Daubin, Eric Tannier
Phylogenetic reconciliation. PLoS Comput. Biol. 18 (11) (2022)
Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinform. 36 (18) (2020)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
Murray Patterson, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
Lateral gene transfer, rearrangement, reconciliation. BMC Bioinform. 14 (S-15) (2013)
Thomas Bigot, Vincent Daubin, Florent Lassalle, Guy Perrière
TPMS: a set of utilities for querying collections of gene trees. BMC Bioinform. 14 (2013)
Vincent Miele, Simon Penel, Vincent Daubin, Franck Picard, Daniel Kahn, Laurent Duret
High-quality sequence clustering guided by network topology and multiple alignment likelihood. Bioinform. 28 (8) (2012)
Sèverine Bérard, Coralie Gallien, Bastien Boussau, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
Evolution of gene neighborhoods within reconciled phylogenies. Bioinform. 28 (18) (2012)
Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry
Models, algorithms and programs for phylogeny reconciliation. Briefings Bioinform. 12 (5) (2011)
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent Daubin
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. BMC Bioinform. 11 (2010)
Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière
Databases of homologous gene families for comparative genomics. BMC Bioinform. 10 (S-6) (2009)
Alexandra Calteau, Vincent Daubin, Guy Perrière
Super-tree Approach for Studying the Phylogeny of Prokaryotes: New Results on Completely Sequenced Genomes. International Conference on Computational Science (2004)