Simon Penel

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 2

Top Topics

Maximum Parsimony

Overlay Network

Top Venues

Publications

Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. Bioinform. 38 (8) (2022)
Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinform. 36 (18) (2020)
Vincent Miele, Simon Penel, Vincent Daubin, Franck Picard, Daniel Kahn, Laurent Duret
High-quality sequence clustering guided by network topology and multiple alignment likelihood. Bioinform. 28 (8) (2012)
Vincent Miele, Simon Penel, Laurent Duret
Ultra-fast sequence clustering from similarity networks with SiLiX. BMC Bioinform. 12 (2011)
Leonor Palmeira, Simon Penel, Vincent Lotteau, Chantal Rabourdin-Combe, Christian Gautier
PhEVER: a database for the global exploration of virus-host evolutionary relationships. Nucleic Acids Res. 39 (Database-Issue) (2011)
Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière
Databases of homologous gene families for comparative genomics. BMC Bioinform. 10 (S-6) (2009)
Jean-François Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, François Rechenmann, Guy Perrière
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinform. 21 (11) (2005)
Paul J. Kersey, Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud, Isabelle Phan, Alexandre Gattiker, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter McLaren, Britt Reimholz, Laurent Duret, Simon Penel, Ingmar Reuter, Rolf Apweiler
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Eric Bazin, Laurent Duret, Simon Penel, Nicolas Galtier
Polymorphix: a sequence polymorphism database. Nucleic Acids Res. 33 (Database-Issue) (2005)
Guy Perrière, Christophe Combet, Simon Penel, Christophe Blanchet, Jean Thioulouse, Christophe Geourjon, Julien Grassot, Céline Charavay, Manolo Gouy, Laurent Duret, Gilbert Deléage
Integrated databanks access and sequence/structure analysis services at the PBIL. Nucleic Acids Res. 31 (13) (2003)