Taoyang Wu

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 20

Top Topics

Phylogenetic Trees

Clustering Method

Maximum Parsimony

Inference Rules

Top Venues

Theor. Comput. Sci.

Adv. Appl. Math.

Publications

Vincent Moulton, Taoyang Wu
Planar Rooted Phylogenetic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Andrew R. Francis, Katharina T. Huber, Vincent Moulton, Taoyang Wu
-cactuses. Adv. Appl. Math. 142 (2023)
Vincent Moulton, Taoyang Wu
Posets and Spaces of $k$-Noncrossing RNA Structures. SIAM J. Discret. Math. 36 (3) (2022)
Junlin Xu, Lingyu Cui, Jujuan Zhuang, Yajie Meng, Pingping Bing, Binsheng He, Geng Tian, Choi Kwok Pui, Taoyang Wu, Bing Wang, Jialiang Yang
Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. Comput. Biol. Medicine 146 (2022)
Ben P. Tatman, Thomas Mock, Taoyang Wu, Cock van Oosterhout
Significance of differential allelic expression in phenotypic plasticity and evolutionary potential of microbial eukaryotes. Quant. Biol. 9 (4) (2021)
Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu
Treewidth of display graphs: bounds, brambles and applications. J. Graph Algorithms Appl. 23 (4) (2019)
Katharina T. Huber, Vincent Moulton, Taoyang Wu
Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks. J. Classif. 36 (2) (2019)
Sarah Bastkowski, Daniel Mapleson, Andreas Spillner, Taoyang Wu, Monika Balvociute, Vincent Moulton
SPECTRE: a suite of phylogenetic tools for reticulate evolution. Bioinform. 34 (6) (2018)
Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu
Treewidth of display graphs: bounds, brambles and applications. CoRR (2018)
Steven Kelk, Georgios Stamoulis, Taoyang Wu
Treewidth distance on phylogenetic trees. Theor. Comput. Sci. 731 (2018)
Vincent Moulton, Andreas Spillner, Taoyang Wu
UPGMA and the normalized equidistant minimum evolution problem. Theor. Comput. Sci. 721 (2018)
Vincent Moulton, Andreas Spillner, Taoyang Wu
UPGMA and the normalized equidistant minimum evolution problem. CoRR (2017)
Leo van Iersel, Vincent Moulton, Eveline de Swart, Taoyang Wu
Binets: fundamental building blocks for phylogenetic networks. CoRR (2017)
Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. Algorithmica 77 (1) (2017)
Vincent Moulton, James Oldman, Taoyang Wu
A cubic-time algorithm for computing the trinet distance between level-1 networks. CoRR (2017)
Vincent Moulton, James Oldman, Taoyang Wu
A cubic-time algorithm for computing the trinet distance between level-1 networks. Inf. Process. Lett. 123 (2017)
Steven Kelk, Georgios Stamoulis, Taoyang Wu
Treewidth distance on phylogenetic trees. CoRR (2017)
Katharina T. Huber, Vincent Moulton, Charles Semple, Taoyang Wu
Quarnet inference rules for level-1 networks. CoRR (2017)
Steven Kelk, Mareike Fischer, Vincent Moulton, Taoyang Wu
Reduction rules for the maximum parsimony distance on phylogenetic trees. Theor. Comput. Sci. 646 (2016)
Sarah Bastkowski, Vincent Moulton, Andreas Spillner, Taoyang Wu
The minimum evolution problem is hard: a link between tree inference and graph clustering problems. Bioinform. 32 (4) (2016)
Steven Kelk, Mareike Fischer, Vincent Moulton, Taoyang Wu
Reduction rules for the maximum parsimony distance on phylogenetic trees. CoRR (2015)
Luca Penso Dolfin, Taoyang Wu, Chris D. Greenman
The combinatorics of tandem duplication. Discret. Appl. Math. 194 (2015)
Vincent Moulton, Taoyang Wu
A parsimony-based metric for phylogenetic trees. Adv. Appl. Math. 66 (2015)
Sven Herrmann, Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu
Optimal realizations of two-dimensional, totally-decomposable metrics. Discret. Math. 338 (8) (2015)
Katharina T. Huber, Vincent Moulton, Charles Semple, Taoyang Wu
Representing Partitions on Trees. SIAM J. Discret. Math. 28 (3) (2014)
Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. CoRR (2014)
Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang
Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Yu Zheng, Taoyang Wu, Louxin Zhang
A Linear-Time Algorithm for Reconciliation of Non-binary Gene Tree and Binary Species Tree. COCOA (2013)
Si Li, Kwok Pui Choi, Taoyang Wu
Degree distribution of large networks generated by the partial duplication model. Theor. Comput. Sci. 476 (2013)
Peter J. Humphries, Taoyang Wu
On the Neighborhoods of Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (3) (2013)
Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu
Obtaining splits from cut sets of tight spans. Discret. Appl. Math. 161 (10-11) (2013)
Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu
Injective optimal realizations of finite metric spaces. Discret. Math. 312 (10) (2012)
Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang
Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History. ISBRA (2012)
László A. Székely, Hua Wang, Taoyang Wu
The sum of the distances between the leaves of a tree and the 'semi-regular' property. Discret. Math. 311 (13) (2011)
Louxin Zhang, Yen Kaow Ng, Taoyang Wu, Yu Zheng
Network model and efficient method for detecting relative duplications or horizontal gene transfers. ICCABS (2011)
Taoyang Wu, Louxin Zhang
Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree. BMC Bioinform. 12 (S-9) (2011)
Peter J. Cameron, Taoyang Wu
The complexity of the weight problem for permutation and matrix groups. Discret. Math. 310 (3) (2010)
Andreas W. M. Dress, Taoyang Wu, XiaoMing Xu
A note on single-linkage equivalence. Appl. Math. Lett. 23 (4) (2010)
Taoyang Wu, Peter J. Cameron, Søren Riis
On the guessing number of shift graphs. J. Discrete Algorithms 7 (2) (2009)
Taoyang Wu, Vincent Moulton, Mike A. Steel
Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (1) (2009)
Christoph Buchheim, Peter J. Cameron, Taoyang Wu
On the subgroup distance problem. Discret. Math. 309 (4) (2009)
Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu
Barriers in metric spaces. Appl. Math. Lett. 22 (8) (2009)
Peter J. Cameron, Taoyang Wu
The complexity of the Weight Problem for permutation groups. Electron. Notes Discret. Math. 28 (2007)
Christoph Buchheim, Peter J. Cameron, Taoyang Wu
On the Subgroup Distance Problem. Electron. Colloquium Comput. Complex. 13 (146) (2006)
Taoyang Wu
Extremal Sequence Theory. ACiD (2006)