Aakrosh Ratan

Publication Activity (10 Years)

Years Active: 2007-2020
Publications (10 Years): 5

Top Topics

Unsupervised Clustering

Hamming Distance

Efficient Search

Top Venues

Quantum Mach. Intell.

PLoS Comput. Biol.

Publications

Kunal Kathuria, Aakrosh Ratan, Michael McConnell, Stefan Bekiranov
Implementation of a Hamming distance-like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne. Quantum Mach. Intell. 2 (1) (2020)
Kunal Kathuria, Aakrosh Ratan
SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures. PLoS Comput. Biol. 16 (3) (2020)
Jianglin Feng, Aakrosh Ratan, Nathan C. Sheffield
Augmented Interval List: a novel data structure for efficient genomic interval search. Bioinform. 35 (23) (2019)
Katarzyna Z. Kedzierska, Livia Gerber, Daniele Cagnazzi, Michael Krützen, Aakrosh Ratan, Logan Kistler
SONiCS: PCR stutter noise correction in genome-scale microsatellites. Bioinform. 34 (23) (2018)
Aakrosh Ratan, Thomas L. Olson, Thomas P. Loughran, Webb Miller
Identification of indels in next-generation sequencing data. BMC Bioinform. 16 (2015)
Aakrosh Ratan, Yu Zhang, Vanessa M. Hayes, Stephan C. Schuster, Webb Miller
Calling SNPs without a reference sequence. BMC Bioinform. 11 (2010)
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Louxin Zhang, Webb Miller, David Haussler
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications. J. Comput. Biol. 15 (8) (2008)
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B. Suh, Webb Miller, David Haussler
The infinite sites model of genome evolution. Proc. Natl. Acad. Sci. USA 105 (38) (2008)
Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler
A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications. RECOMB-CG (2007)