Caroline Colijn

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 13

Top Topics

Maximum Entropy

Dynamic Networks

Infectious Disease Outbreaks

Similarity Matrices

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

J. Appl. Probab.

Publications

Cédric Chauve, Caroline Colijn, Louxin Zhang
A Vector Representation for Phylogenetic Trees. CoRR (2024)
Shijia Wang, Shufei Ge, Benjamin Sobkowiak, Liangliang Wang, Louis Grandjean, Caroline Colijn, Lloyd T. Elliott
Genome-Wide Association with Uncertainty in the Genetic Similarity Matrix. J. Comput. Biol. 30 (2) (2023)
Nicola Mulberry, Alexander R. Rutherford, Caroline Colijn
Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling. PLoS Comput. Biol. 19 (12) (2023)
Paul F. Tupper, Caroline Colijn
COVID-19 in schools: Mitigating classroom clusters in the context of variable transmission. PLoS Comput. Biol. 17 (7) (2021)
Shijia Wang, Shufei Ge, Caroline Colijn, Priscila Biller, Liangliang Wang, Lloyd T. Elliott
Estimating Genetic Similarity Matrices Using Phylogenies. J. Comput. Biol. 28 (6) (2021)
Cornelia Metzig, Matthew Gould, Roshan Noronha, Roshani Abbey, Mark Sandler, Caroline Colijn
Classification of origin with feature selection and network construction for folk tunes. Pattern Recognit. Lett. 133 (2020)
Sean C. Anderson, Andrew M. Edwards, Madi Yerlanov, Nicola Mulberry, Jessica E. Stockdale, Sarafa A. Iyaniwura, Rebeca C. Falcao, Michael C. Otterstatter, Michael A. Irvine, Naveed Z. Janjua, Daniel Coombs, Caroline Colijn
Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing. PLoS Comput. Biol. 16 (12) (2020)
Cornelia Metzig, Caroline Colijn
A Maximum Entropy Method for the Prediction of Size Distributions. Entropy 22 (3) (2020)
Cornelia Metzig, Oliver Ratmann, Daniela Bezemer, Caroline Colijn
Phylogenies from dynamic networks. PLoS Comput. Biol. 15 (2) (2019)
Don Klinkenberg, Jantien A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga
Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks. PLoS Comput. Biol. 13 (5) (2017)
Nick Fyson, Jerry King, Thomas Belcher, Andrew Preston, Caroline Colijn
A curated genome-scale metabolic model of Bordetella pertussis metabolism. PLoS Comput. Biol. 13 (7) (2017)
Giacomo Plazzotta, Caroline Colijn
Asymptotic frequency of shapes in supercritical branching trees. J. Appl. Probab. 53 (4) (2016)
Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen
Infections. PLoS Comput. Biol. 12 (2) (2016)
Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn
How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies. PLoS Comput. Biol. 9 (6) (2013)
Kuhn Ip, Caroline Colijn, Desmond S. Lun
Analysis of complex metabolic behavior through pathway decomposition. BMC Syst. Biol. 5 (2011)
Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan
Mycolic Acid Production. PLoS Comput. Biol. 5 (8) (2009)
Caroline Colijn, Michael C. Mackey
Bifurcation and Bistability in a Model of Hematopoietic Regulation. SIAM J. Appl. Dyn. Syst. 6 (2) (2007)