Leonid Chindelevitch

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 27

Top Topics

Causal Discovery

Distance Measurement

Drug Resistance

Top Venues

Publications

João Paulo Pereira Zanetti, Lucas Peres Oliveira, João Meidanis, Leonid Chindelevitch
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (3) (2024)
Leonid Chindelevitch, Maarten van Dongen, Heather Graz, Antonio Pedrotta, Anita Suresh, Swapna Uplekar, Elita Jauneikaite, Nicole E. Wheeler
Ten simple rules for the sharing of bacterial genotype - Phenotype data on antimicrobial resistance. PLoS Comput. Biol. 19 (6) (2023)
Romain Derelle, John Lees, Jody Phelan, Ajit Lalvani, Nimalan Arinaminpathy, Leonid Chindelevitch
complex lineage typing. Bioinform. 39 (10) (2023)
João Paulo Pereira Zanetti, Lucas Peres Oliveira, Leonid Chindelevitch, João Meidanis
Generalizations of the genomic rank distance to indels. Bioinform. 39 (3) (2023)
Nafiseh Sedaghat, Tamon Stephen, Leonid Chindelevitch
Speeding Up the Structural Analysis of Metabolic Network Models Using the Fredman-Khachiyan Algorithm B. J. Comput. Biol. 30 (6) (2023)
Mehrdad Mansouri, Sahand Khakabimamaghani, Leonid Chindelevitch, Martin Ester
Aristotle: stratified causal discovery for omics data. BMC Bioinform. 23 (1) (2022)
Leonid Chindelevitch, Elita Jauneikaite, Nicole E. Wheeler, Kasim Allel, Bede Yaw Ansiri-Asafoakaa, Wireko A. Awuah, Denis C. Bauer, Stephan Beisken, Kara Fan, Gary Grant, Michael Graz, Yara Khalaf, Veranja Liyanapathirana, Carlos Montefusco-Pereira, Lawrence Mugisha, Atharv Naik, Sylvia Nanono, Anthony Nguyen, Timothy Rawson, Kessendri Reddy, Juliana M. Ruzante, Anneke Schmider, Roman Stocker, Leonhardt Unruh, Daniel Waruingi, Heather Graz, Maarten van Dongen
Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward. CoRR (2022)
Amir Hosein Safari, Nafiseh Sedaghat, Hooman Zabeti, Alpha Forna, Leonid Chindelevitch, Maxwell W. Libbrecht
using a long-term recurrent convolutional network. BCB (2021)
Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis. Algorithms Mol. Biol. 16 (1) (2021)
Hooman Zabeti, Nick C. Dexter, Amirhossein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis. WABI (2020)
Mrinank Sharma, Sören Mindermann, Jan Markus Brauner, Gavin Leech, Anna B. Stephenson, Tomas Gavenciak, Jan Kulveit, Yee Whye Teh, Leonid Chindelevitch, Yarin Gal
How Robust are the Estimated Effects of Nonpharmaceutical Interventions against COVID-19? NeurIPS (2020)
Mrinank Sharma, Sören Mindermann, Jan Markus Brauner, Gavin Leech, Anna B. Stephenson, Tomas Gavenciak, Jan Kulveit, Yee Whye Teh, Leonid Chindelevitch, Yarin Gal
On the robustness of effectiveness estimation of nonpharmaceutical interventions against COVID-19 transmission. CoRR (2020)
Maryam Hayati, Leonid Chindelevitch
Computing the distribution of the Robinson-Foulds distance. Comput. Biol. Chem. 87 (2020)
Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen, Johnathan Wong, William Hsiao, Cédric Chauve, Leonid Chindelevitch
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. AlCoB (2020)
Sahand Khakabimamaghani, Salem Malikic, Jeffrey Tang, Dujian Ding, Ryan D. Morin, Leonid Chindelevitch, Martin Ester
Collaborative intra-tumor heterogeneity detection. Bioinform. 35 (14) (2019)
Guo Liang Gan, Elijah Willie, Cédric Chauve, Leonid Chindelevitch
Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework. BMC Bioinform. (20) (2019)
Leonid Chindelevitch, Sean La, Joao Meidanis
A cubic algorithm for the generalized rank median of three genomes. Algorithms Mol. Biol. 14 (1) (2019)
João Paulo Pereira Zanetti, Leonid Chindelevitch, João Meidanis
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance. AlCoB (2019)
João Paulo Pereira Zanetti, Leonid Chindelevitch, João Meidanis
Generalizations of the Genomic Rank Distance to Indels. AlCoB (2019)
Reza Miraskarshahi, Hooman Zabeti, Tamon Stephen, Leonid Chindelevitch
MCS2: minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks. Bioinform. 35 (14) (2019)
Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. WABI (2018)
Hooman Zabeti, Tamon Stephen, Bonnie Berger, Leonid Chindelevitch
A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. WABI (2018)
Leonid Chindelevitch, João Paulo Pereira Zanetti, João Meidanis
On the rank-distance median of 3 permutations. BMC Bioinform. (6) (2018)
Leonid Chindelevitch, Joao Meidanis
A Cubic Algorithm for the Generalized Rank Median of Three Genomes. RECOMB-CG (2018)
Nafiseh Sedaghat, Tamon Stephen, Leonid Chindelevitch
Speeding up Dualization in the Fredman-Khachiyan Algorithm B. SEA (2018)
Leonid Chindelevitch, João Meidanis
On the Rank-Distance Median of 3 Permutations. RECOMB-CG (2017)
Leonid Chindelevitch, Caroline Colijn, Prashini Moodley, Douglas Wilson, Ted Cohen
Infections. PLoS Comput. Biol. 12 (2) (2016)
Leonid Chindelevitch, Cheng-Yu Ma, Chung-Shou Liao, Bonnie Berger
Optimizing a global alignment of protein interaction networks. Bioinform. 29 (21) (2013)
Chia-Ling Huang, John Lamb, Leonid Chindelevitch, Jarek Kostrowicki, Justin Guinney, Charles DeLisi, Daniel Ziemek
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge. BMC Bioinform. 13 (2012)
Leonid Chindelevitch, Po-Ru Loh, Ahmed Enayetallah, Bonnie Berger, Daniel Ziemek
Assessing statistical significance in causal graphs. BMC Bioinform. 13 (2012)
Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel, Enoch S. Huang
Causal reasoning on biological networks: interpreting transcriptional changes. Bioinform. 28 (8) (2012)
Leonid Chindelevitch, Aviv Regev, Bonnie Berger
Metabolic Network Analysis Demystified. RECOMB (2011)
Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel, Enoch S. Huang
Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). RECOMB (2011)
Leonid Chindelevitch, Chung-Shou Liao, Bonnie Berger
Local Optimization for Global Alignment of Protein Interaction Networks. Pacific Symposium on Biocomputing (2010)
Michael Schnall-Levin, Leonid Chindelevitch, Bonnie Berger
Inverting the Viterbi algorithm: an abstract framework for structure design. ICML (2008)
Leonid Chindelevitch, Zhentao Li, Eric Blais, Mathieu Blanchette
On the Inference of Parsimonious Indel Evolutionary Scenarios. J. Bioinform. Comput. Biol. 4 (3) (2006)