Charles DeLisi

Publication Activity (10 Years)

Years Active: 1984-2016
Publications (10 Years): 1

Top Topics

Causal Knowledge

Biomedical Informatics

Magnetic Resonance Spectroscopy

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

J. Am. Medical Informatics Assoc.

Publications

Brian Granger, Yi-Chien Chang, Yan Wang, Charles DeLisi, Daniel Segrè, Zhenjun Hu
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0. PLoS Comput. Biol. 12 (4) (2016)
Zhenjun Hu, Yi-Chien Chang, Yan Wang, Chia-Ling Huang, Yang Liu, Feng Tian, Brian Granger, Charles DeLisi
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung, Chia-Ling Huang, Yajie Wang, Charles DeLisi
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer. PLoS Comput. Biol. 8 (2) (2012)
Chia-Ling Huang, John Lamb, Leonid Chindelevitch, Jarek Kostrowicki, Justin Guinney, Charles DeLisi, Daniel Ziemek
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge. BMC Bioinform. 13 (2012)
Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi
Gene set enrichment analysis: performance evaluation and usage guidelines. Briefings Bioinform. 13 (3) (2012)
Brian D. Athey, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn, Barbara Mirel, Matthias Kretzler, Charles F. Burant, Raphael D. Isokpehi, Charles DeLisi
The NIH National Center for Integrative Biomedical Informatics (NCIBI). J. Am. Medical Informatics Assoc. 19 (2) (2012)
Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Res. 39 (Database-Issue) (2011)
Yue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi
Smoothing Gene Expression Using Biological Networks. ICMLA (2010)
Zhenjun Hu, Jui-Hung Hung, Yan Wang, Yi-Chien Chang, Chia-Ling Huang, Matt Huyck, Charles DeLisi
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Bolan Linghu, Evan S. Snitkin, Dustin T. Holloway, Adam M. Gustafson, Yu Xia, Charles DeLisi
High-precision high-coverage functional inference from integrated data sources. BMC Bioinform. 9 (2008)
Yue Fan, Mark A. Kon, Charles DeLisi
Ensemble Machine Methods for DNA Binding. ICMLA (2008)
Zhenjun Hu, Evan S. Snitkin, Charles DeLisi
VisANT: an integrative framework for networks in systems biology. Briefings Bioinform. 9 (4) (2008)
Mark A. Kon, Dustin T. Holloway, Yue Fan, Chaitanya Sai, Charles DeLisi
Learning Methods for DNA Binding in Computational Biology. IJCNN (2007)
Timothy E. Reddy, Charles DeLisi, Boris E. Shakhnovich
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites. PLoS Comput. Biol. 3 (5) (2007)
Mark A. Kon, Yue Fan, Dustin T. Holloway, Charles DeLisi
SVMotif: A Machine Learning Motif Algorithm. ICMLA (2007)
Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot
Portraits of breast cancer progression. BMC Bioinform. 8 (2007)
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mellor, Jie Wu, Charles DeLisi
Comparative assessment of performance and genome dependence among phylogenetic profiling methods. BMC Bioinform. 7 (2006)
Jie Wu, Zhenjun Hu, Charles DeLisi
Gene annotation and network inference by phylogenetic profiling. BMC Bioinform. 7 (2006)
Joe Mellor, Charles DeLisi
-motif content. ISMB (Supplement of Bioinformatics) (2006)
Dustin T. Holloway, Mark A. Kon, Charles DeLisi
Machine learning methods for transcription data integration. IBM J. Res. Dev. 50 (6) (2006)
Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin T. Holloway, Charles DeLisi
VisANT: data-integrating visual framework for biological networks and modules. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Charles DeLisi
Discovery and Annotation of Genetic Modules. RECOMB (2005)
Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLisi
VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinform. 5 (2004)
Jie Wu, Simon Kasif, Charles DeLisi
Identification of functional links between genes using phylogenetic profiles. Bioinform. 19 (12) (2003)
Boris E. Shakhnovich, John M. Harvey, Steve Comeau, David Lorenz, Charles DeLisi, Eugene I. Shakhnovich
ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations. BMC Bioinform. 4 (2003)
Joseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, Charles DeLisi
Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 30 (1) (2002)
Rhonda Harrison, Charles DeLisi
A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c.. SAC (2002)
Rhonda Harrison, Charles DeLisi
Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae. Bioinform. 18 (10) (2002)
Charles DeLisi, Sandor Vajda
Computational problems in cell biology. Comput. Sci. Eng. 1 (3) (1999)
Kamalakar Gulukota, Sandor Vajda, Charles DeLisi
Peptide docking using dynamic programming. J. Comput. Chem. 17 (4) (1996)
Qiang Zheng, Rakefet Rosenfeld, Sandor Vajda, Charles DeLisi
Loop closure via bond scaling and relaxation. J. Comput. Chem. 14 (5) (1993)
Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi
Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Res. 12 (1) (1984)