Jean-Loup Faulon

Publication Activity (10 Years)

Years Active: 1992-2019
Publications (10 Years): 5

Top Topics

Molecular Structures

High Throughput

Virtual Screening

Computational Biology

Top Venues

Nucleic Acids Res.

J. Cheminformatics

BMC Syst. Biol.

Publications

Thomas Duigou, Melchior du Lac, Pablo Carbonell, Jean-Loup Faulon
RetroRules: a database of reaction rules for engineering biology. Nucleic Acids Res. 47 (Database-Issue) (2019)
Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon
Selenzyme: enzyme selection tool for pathway design. Bioinform. 34 (12) (2018)
Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts. Bioinform. 34 (13) (2018)
Mathilde Koch, Thomas Duigou, Pablo Carbonell, Jean-Loup Faulon
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0. J. Cheminformatics 9 (1) (2017)
Baudoin Delépine, Vincent Libis, Pablo Carbonell, Jean-Loup Faulon
SensiPath: computer-aided design of sensing-enabling metabolic pathways. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Pablo Carbonell, Pierre Parutto, Joan Hérisson, Shashi Bhushan Pandit, Jean-Loup Faulon
XTMS: pathway design in an eXTended metabolic space. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Cyrille Pauthenier, Jean-Loup Faulon
PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Baudoin Delépine, Pablo Carbonell, Jean-Loup Faulon
XTMS in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds. CMSB (2014)
Mohammad Mahdi Jaghoori, Sung-Shik T. Q. Jongmans, Frank S. de Boer, Julio E. Peironcely, Jean-Loup Faulon, Theo H. Reijmers, Thomas Hankemeier
PMG: Multi-core Metabolite Identification. Electron. Notes Theor. Comput. Sci. 299 (2013)
Jaewook Joo, Steven J. Plimpton, Jean-Loup Faulon
Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κ. BMC Syst. Biol. 7 (2013)
Pablo Carbonell, Lars Carlsson, Jean-Loup Faulon
Stereo Signature Molecular Descriptor. J. Chem. Inf. Model. 53 (4) (2013)
Pablo Carbonell, Davide Fichera, Shashi Bhushan Pandit, Jean-Loup Faulon
Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms. BMC Syst. Biol. 6 (2012)
Jörg K. Wegner, Aaron D. Sterling, Rajarshi Guha, Andreas Bender, Jean-Loup Faulon, Janna Hastings, Noel M. O'Boyle, John P. Overington, Herman van Vlijmen, Egon L. Willighagen
Cheminformatics. Commun. ACM 55 (11) (2012)
Julio E. Peironcely, Miguel Rojas-Chertó, Davide Fichera, Theo H. Reijmers, Leon Coulier, Jean-Loup Faulon, Thomas Hankemeier
OMG: open molecule generator. J. Cheminformatics 4 (2012)
Pablo Carbonell, Anne-Gaëlle Planson, Davide Fichera, Jean-Loup Faulon
A retrosynthetic biology approach to metabolic pathway design for therapeutic production. BMC Syst. Biol. 5 (2011)
Genetha A. Gray, Pamela J. Williams, W. Michael Brown, Jean-Loup Faulon, Kenneth L. Sale
Disparate data fusion for protein phosphorylation prediction. Ann. Oper. Res. 174 (1) (2010)
Pablo Carbonell, Jean-Loup Faulon
Molecular signatures-based prediction of enzyme promiscuity. Bioinform. 26 (16) (2010)
Jean-Loup Faulon, Milind Misra, Shawn Martin, Ken Sale, Rajat Sapra
Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor. Bioinform. 24 (2) (2008)
Shawn Martin, Zhaoduo Zhang, Anthony Martino, Jean-Loup Faulon
Boolean dynamics of genetic regulatory networks inferred from microarray time series data. Bioinform. 23 (7) (2007)
W. Michael Brown, Shawn Martin, Mark D. Rintoul, Jean-Loup Faulon
Designing Novel Polymers with Targeted Properties Using the Signature Molecular Descriptor. J. Chem. Inf. Model. 46 (2) (2006)
W. Michael Brown, Jean-Loup Faulon, Ken Sale
A deterministic algorithm for constrained enumeration of transmembrane protein folds. Comput. Biol. Chem. 29 (2) (2005)
Shawn Martin, W. Michael Brown, Jean-Loup Faulon, Derick C. Weis, Donald P. Visco
Inverse Design of Large Molecules using Linear Diophantine Equations. CSB Workshops (2005)
Jean-Loup Faulon, W. Michael Brown, Shawn Martin
Reverse engineering chemical structures from molecular descriptors: how many solutions? J. Comput. Aided Mol. Des. 19 (9-10) (2005)
Shawn Martin, Diana C. Roe, Jean-Loup Faulon
Predicting protein-protein interactions using signature products. Bioinform. 21 (2) (2005)
Jean-Loup Faulon, Shawn Martin, Robert D. Carr
Dynamical Robustness in Gene Regulatory Networks. CSB (2004)
Jean-Loup Faulon, Michael J. Collins, Robert D. Carr
The Signature Molecular Descriptor. 4. Canonizing Molecules Using Extended Valence Sequences. J. Chem. Inf. Model. 44 (2) (2004)
Shawn Martin, George Davidson, Elebeoba E. May, Jean-Loup Faulon, Margaret Werner-Washburne
Inferring Genetic Networks from Microarray Data. CSB (2004)
Jean-Loup Faulon, Carla J. Churchwell, Donald P. Visco Jr.
The Signature Molecular Descriptor. 2. Enumerating Molecules from Their Extended Valence Sequences. J. Chem. Inf. Comput. Sci. 43 (3) (2003)
Jean-Loup Faulon, Donald P. Visco Jr., Ramdas S. Pophale
The Signature Molecular Descriptor. 1. Using Extended Valence Sequences in QSAR and QSPR Studies. J. Chem. Inf. Comput. Sci. 43 (3) (2003)
Jean-Loup Faulon, Allen G. Sault
Stochastic Generator of Chemical Structure. 3. Reaction Network Generation. J. Chem. Inf. Comput. Sci. 41 (4) (2001)
Jean-Loup Faulon
Stochastic generator of chemical structure. 4. Building polymeric systems with specified properties. J. Comput. Chem. 22 (6) (2001)
Jean-Loup Faulon
Isomorphism, Automorphism Partitioning, and Canonical Labeling Can Be Solved in Polynomial-Time for Molecular Graphs. J. Chem. Inf. Comput. Sci. 38 (3) (1998)
Jean-Loup Faulon, J. David Hobbs, David M. Ford, Robert T. Wilcox
Massively Parallel Simulations of Diffusion in Dense Polymeric Structures. SC (1997)
Jean-Loup Faulon
Stochastic Generator of Chemical Structure, 2. Using Simulated Annealing To Search the Space of Constitutional Isomers. J. Chem. Inf. Comput. Sci. 36 (4) (1996)
Jean-Loup Faulon
Stochastic Generator of Chemical Structure. 1. Application to the Structure Elucidation of Large Molecules. J. Chem. Inf. Comput. Sci. 34 (5) (1994)
Jean-Loup Faulon
On using graph-equivalent classes for the structure elucidation of large molecules. J. Chem. Inf. Comput. Sci. 32 (4) (1992)