A deterministic algorithm for constrained enumeration of transmembrane protein folds.
W. Michael BrownJean-Loup FaulonKen SalePublished in: Comput. Biol. Chem. (2005)
Keyphrases
- dynamic programming
- search space
- np hard
- experimental evaluation
- computational cost
- times faster
- preprocessing
- probabilistic model
- high accuracy
- computational complexity
- theoretical analysis
- learning algorithm
- clustering method
- detection algorithm
- optimization algorithm
- segmentation algorithm
- linear programming
- worst case
- k means
- objective function
- particle swarm optimization
- expectation maximization
- simulated annealing
- significant improvement
- matching algorithm
- neural network
- convergence rate
- constrained problems
- remote homology detection