Andrew Leaver-Fay

Publication Activity (10 Years)

Years Active: 2004-2020
Publications (10 Years): 3

Top Topics

Protein Structural

Geographically Dispersed

Software Development

Top Venues

PLoS Comput. Biol.

Publications

Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
Better together: Elements of successful scientific software development in a distributed collaborative community. PLoS Comput. Biol. 16 (5) (2020)
Rebecca F. Alford, Andrew Leaver-Fay, Lynda Gonzales, Erin L. Dolan, Jeffrey J. Gray
A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design. PLoS Comput. Biol. 13 (12) (2017)
Robert Kleffner, Jeff Flatten, Andrew Leaver-Fay, David Baker, Justin B. Siegel, Firas Khatib, Seth Cooper
Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. Bioinform. 33 (17) (2017)
Seth Cooper, Firas Khatib, Adrien Treuille, Janos Barbero, Jeehyung Lee, Michael Beenen, Andrew Leaver-Fay, David Baker, Zoran Popovic, Foldit players
Predicting protein structures with a multiplayer online game. Nat. 466 (7307) (2010)
Seth Cooper, Adrien Treuille, Janos Barbero, Andrew Leaver-Fay, Kathleen Tuite, Firas Khatib, Alex Cho Snyder, Michael Beenen, David Salesin, David Baker, Zoran Popovic
The challenge of designing scientific discovery games. FDG (2010)
Andrew Leaver-Fay, Jack Snoeyink, Brian Kuhlman
On-the-Fly Rotamer Pair Energy Evaluation in Protein Design. ISBRA (2008)
Andrew Leaver-Fay, Yuanxin Liu, Jack Snoeyink, Xueyi Wang
Faster placement of hydrogens in protein structures by dynamic programming. ACM J. Exp. Algorithmics 12 (2007)
Andrew Leaver-Fay, Glenn L. Butterfoss, Jack Snoeyink, Brian Kuhlman
Maintaining solvent accessible surface area under rotamer substitution for protein design. J. Comput. Chem. 28 (8) (2007)
Ian W. Davis, Andrew Leaver-Fay, Vincent B. Chen, Jeremy N. Block, Gary J. Kapral, Xueyi Wang, Laura Weston Murray, W. Bryan Arendall III, Jack Snoeyink, Jane S. Richardson, David C. Richardson
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem. Pacific Symposium on Biocomputing (2005)
Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
Rotamer-Pair Energy Calculations Using a Trie Data Structure. WABI (2005)
Andrew Leaver-Fay, Yuanxin Liu, Jack Snoeyink
Faster Placement of Hydrogens in Protein Structures by Dynamic Programming. ALENEX/ANALC (2004)