Jared Adolf-Bryfogle

Publication Activity (10 Years)

Years Active: 2015-2021
Publications (10 Years): 5

Top Topics

Protein Structure Alignment

Experimentally Determined

Software Development

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

J. Comput. Chem.

Publications

Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Jared Adolf-Bryfogle, William R. Schief, Brian G. Pierce
CoV3D: a database of high resolution coronavirus protein structures. Nucleic Acids Res. 49 (Database-Issue) (2021)
Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
Better together: Elements of successful scientific software development in a distributed collaborative community. PLoS Comput. Biol. 16 (5) (2020)
Jared Adolf-Bryfogle, Oleksandr Kalyuzhniy, Michael Kubitz, Brian D. Weitzner, Xiaozhen Hu, Yumiko Adachi, William R. Schief, Roland L. Dunbrack Jr.
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. PLoS Comput. Biol. 14 (4) (2018)
Jason W. Labonte, Jared Adolf-Bryfogle, William R. Schief, Jeffrey J. Gray
Residue-centric modeling and design of saccharide and glycoconjugate structures. J. Comput. Chem. 38 (5) (2017)
Jared Adolf-Bryfogle, Qifang Xu, Benjamin North, Andreas Lehmann, Roland L. Dunbrack Jr.
PyIgClassify: a database of antibody CDR structural classifications. Nucleic Acids Res. 43 (Database-Issue) (2015)