Aleksandra M. Walczak

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 22

Top Topics

Immune Response

Probabilistic Model

Programming Tool

Mutual Information Maximization

Top Venues

PLoS Comput. Biol.

Publications

Francesco Camaglia, Ilya Nemenman, Thierry Mora, Aleksandra M. Walczak
Bayesian estimation of the Kullback-Leibler divergence for categorical sytems using mixtures of Dirichlet priors. CoRR (2023)
Cosimo Lupo, Natanael Spisak, Aleksandra M. Walczak, Thierry Mora
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. PLoS Comput. Biol. 18 (6) (2022)
Kamesh Krishnamurthy, Ann M. Hermundstad, Thierry Mora, Aleksandra M. Walczak, Vijay Balasubramanian
Disorder and the Neural Representation of Complex Odors. Frontiers Comput. Neurosci. 16 (2022)
Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra M. Walczak, Irene Giardina
The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes. CoRR (2021)
Vedant Sachdeva, Thierry Mora, Aleksandra M. Walczak, Stephanie E. Palmer
Optimal prediction with resource constraints using the information bottleneck. PLoS Comput. Biol. 17 (3) (2021)
Giulio Isacchini, Natanael Spisak, Armita Nourmohammad, Thierry Mora, Aleksandra M. Walczak
MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories. CoRR (2021)
Barbara Bravi, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco
Probing T-cell response by sequence-based probabilistic modeling. PLoS Comput. Biol. 17 (9) (2021)
Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra M. Walczak, Thierry Mora
SOS: online probability estimation and generation of T-and B-cell receptors. Bioinform. 36 (16) (2020)
Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra M. Walczak, Yuval Elhanati
Population variability in the generation and selection of T-cell repertoires. PLoS Comput. Biol. 16 (12) (2020)
Maximilian Puelma Touzel, Aleksandra M. Walczak, Thierry Mora
Inferring the immune response from repertoire sequencing. PLoS Comput. Biol. 16 (4) (2020)
Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora
Genesis of the αβ T-cell receptor. PLoS Comput. Biol. 15 (3) (2019)
Zachary Sethna, Yuval Elhanati, Jr Curtis G. Callan, Aleksandra M. Walczak, Thierry Mora
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinform. 35 (17) (2019)
Jacopo Marchi, Ezequiel A. Galpern, Rocío Espada, Diego U. Ferreiro, Aleksandra M. Walczak, Thierry Mora
Size and structure of the sequence space of repeat proteins. PLoS Comput. Biol. 15 (8) (2019)
Paulina Szymanska-Rozek, Dario Villamaina, Jacek Miekisz, Aleksandra M. Walczak
Dissipation in Non-Steady State Regulatory Circuits. Entropy 21 (12) (2019)
Nicholas A. Rossi, Thierry Mora, Aleksandra M. Walczak, Mary J. Dunlop
Active degradation of MarA controls coordination of its downstream targets. PLoS Comput. Biol. 14 (12) (2018)
Huy Tran, Jonathan Desponds, Carmina Perez Romero, Mathieu Coppey, Cecile Fradin, Nathalie Dostatni, Aleksandra M. Walczak
Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern. PLoS Comput. Biol. 14 (10) (2018)
Mikhail V. Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L. Sycheva, Ekaterina Komech, Vadim I. Nazarov, Olga V. Britanova, Dmitry M. Chudakov, Ilgar Z. Mamedov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13 (7) (2017)
Charles K. Fisher, Thierry Mora, Aleksandra M. Walczak
Variable habitat conditions drive species covariation in the human microbiota. PLoS Comput. Biol. 13 (4) (2017)
Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
Inferring repeat-protein energetics from evolutionary information. PLoS Comput. Biol. 13 (6) (2017)
Andrew Mugler, Mark Kittisopikul, Luke Hayden, Jintao Liu, Chris H. Wiggins, Gürol M. Süel, Aleksandra M. Walczak
Competence Circuit. PLoS Comput. Biol. 12 (3) (2016)
Yuval Elhanati, Quentin Marcou, Thierry Mora, Aleksandra M. Walczak
repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinform. 32 (13) (2016)
Jonathan Desponds, Huy Tran, Teresa Ferraro, Tanguy Lucas, Carmina Perez Romero, Aurelien Guillou, Cecile Fradin, Mathieu Coppey, Nathalie Dostatni, Aleksandra M. Walczak
Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos. PLoS Comput. Biol. 12 (12) (2016)
Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
Capturing coevolutionary signals inrepeat proteins. BMC Bioinform. 16 (2015)
Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Tomas Grigera, Asja Jelic, Stefania Melillo, Thierry Mora, Leonardo Parisi, Edmondo Silvestri, Massimiliano Viale, Aleksandra M. Walczak
Flocking and turning: a new model for self-organized collective motion. CoRR (2014)
Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures. PLoS Comput. Biol. 4 (5) (2008)