Dmitry M. Chudakov

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 7

Top Topics

Microscope Images

Population Dynamics

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Briefings Bioinform.

Publications

Alexey N. Davydov, Dmitry Bolotin, Stanislav V. Poslavsky, Dmitry M. Chudakov
Comment on 'rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing'. Briefings Bioinform. 24 (6) (2023)
Dmitry V. Bagaev, Renske M. A. Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S. Egorov, Ivan V. Zvyagin, Nina Babel, David K. Cole, Andrew J. Godkin, Andrew K. Sewell, Can Kesmir, Dmitry M. Chudakov, Fabio Luciani, Mikhail Shugay
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Res. 48 (Database-Issue) (2020)
Mikhail Shugay, Dmitriy V. Bagaev, Ivan V. Zvyagin, Renske M. A. Vroomans, Jeremy Chase Crawford, Garry Dolton, Ekaterina Komech, Anastasiya L. Sycheva, Anna E. Koneva, Evgeniy S. Egorov, Alexey V. Eliseev, Ewald van Dyk, Pradyot Dash, Meriem Attaf, Cristina Rius, Kristin Ladell, James E. McLaren, Katherine K. Matthews, E. Bridie Clemens, Daniel C. Douek, Fabio Luciani, Debbie van Baarle, Katherine Kedzierska, Can Kesmir, Paul G. Thomas, David A. Price, Andrew K. Sewell, Dmitry M. Chudakov
VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. Nucleic Acids Res. 46 (Database-Issue) (2018)
Mikhail V. Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L. Sycheva, Ekaterina Komech, Vadim I. Nazarov, Olga V. Britanova, Dmitry M. Chudakov, Ilgar Z. Mamedov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13 (7) (2017)
Mikhail Shugay, Andrew R. Zaretsky, Dmitriy A. Shagin, Irina A. Shagina, Ivan A. Volchenkov, Andrew A. Shelenkov, Mikhail Y. Lebedin, Dmitriy V. Bagaev, Sergey A. Lukyanov, Dmitry M. Chudakov
MAGERI: Computational pipeline for molecular-barcoded targeted resequencing. PLoS Comput. Biol. 13 (5) (2017)
Karen S. Sarkisyan, Dmitry Bolotin, Margarita V. Meer, Dinara R. Usmanova, Alexander S. Mishin, George V. Sharonov, Dmitry N. Ivankov, Nina G. Bozhanova, Mikhail S. Baranov, Onuralp Soylemez, Natalya S. Bogatyreva, Peter K. Vlasov, Evgeny S. Egorov, Maria D. Logacheva, Alexey S. Kondrashov, Dmitry M. Chudakov, Ekaterina V. Putintseva, Ilgar Z. Mamedov, Dan S. Tawfik, Konstantin A. Lukyanov, Fyodor A. Kondrashov
Local fitness landscape of the green fluorescent protein. Nat. 533 (7603) (2016)
Mikhail Shugay, Dmitriy V. Bagaev, Maria A. Turchaninova, Dmitriy A. Bolotin, Olga V. Britanova, Ekaterina V. Putintseva, Mikhail V. Pogorelyy, Vadim I. Nazarov, Ivan V. Zvyagin, Vitalina I. Kirgizova, Kirill I. Kirgizov, Elena V. Skorobogatova, Dmitry M. Chudakov
VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. PLoS Comput. Biol. 11 (11) (2015)
Lukas Leder, Wilhelm Stark, Felix Freuler, May Marsh, Marco Meyerhofer, Thomas Stettler, Lorenz M. Mayr, Olga V. Britanova, Lydia A. Strukova, Dmitry M. Chudakov, Ekaterina A. Souslova
Concentrations. Sensors 10 (9) (2010)