Thierry Mora

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 24

Top Topics

Mutual Information Maximization

Probabilistic Modeling

Immune Response

Top Venues

PLoS Comput. Biol.

Publications

Francesco Camaglia, Ilya Nemenman, Thierry Mora, Aleksandra M. Walczak
Bayesian estimation of the Kullback-Leibler divergence for categorical sytems using mixtures of Dirichlet priors. CoRR (2023)
Cosimo Lupo, Natanael Spisak, Aleksandra M. Walczak, Thierry Mora
Learning the statistics and landscape of somatic mutation-induced insertions and deletions in antibodies. PLoS Comput. Biol. 18 (6) (2022)
Siwei Wang, Benjamin Hoshal, Elizabeth de Laittre, Thierry Mora, Michael Berry, Stephanie E. Palmer
Learning low-dimensional generalizable natural features from retina using a U-net. NeurIPS (2022)
Kamesh Krishnamurthy, Ann M. Hermundstad, Thierry Mora, Aleksandra M. Walczak, Vijay Balasubramanian
Disorder and the Neural Representation of Complex Odors. Frontiers Comput. Neurosci. 16 (2022)
Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra M. Walczak, Irene Giardina
The Connection between Discrete- and Continuous-Time Descriptions of Gaussian Continuous Processes. CoRR (2021)
Vedant Sachdeva, Thierry Mora, Aleksandra M. Walczak, Stephanie E. Palmer
Optimal prediction with resource constraints using the information bottleneck. PLoS Comput. Biol. 17 (3) (2021)
Giulio Isacchini, Natanael Spisak, Armita Nourmohammad, Thierry Mora, Aleksandra M. Walczak
MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood Inference from Sampled Trajectories. CoRR (2021)
Barbara Bravi, Vinod P. Balachandran, Benjamin D. Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco
Probing T-cell response by sequence-based probabilistic modeling. PLoS Comput. Biol. 17 (9) (2021)
Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra M. Walczak, Thierry Mora
SOS: online probability estimation and generation of T-and B-cell receptors. Bioinform. 36 (16) (2020)
Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra M. Walczak, Yuval Elhanati
Population variability in the generation and selection of T-cell repertoires. PLoS Comput. Biol. 16 (12) (2020)
Gabriel Mahuas, Giulio Isacchini, Olivier Marre, Ulisse Ferrari, Thierry Mora
A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons. CoRR (2020)
Maximilian Puelma Touzel, Aleksandra M. Walczak, Thierry Mora
Inferring the immune response from repertoire sequencing. PLoS Comput. Biol. 16 (4) (2020)
Gabriel Mahuas, Giulio Isacchini, Olivier Marre, Ulisse Ferrari, Thierry Mora
A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons. NeurIPS (2020)
Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora
Genesis of the αβ T-cell receptor. PLoS Comput. Biol. 15 (3) (2019)
Zachary Sethna, Yuval Elhanati, Jr Curtis G. Callan, Aleksandra M. Walczak, Thierry Mora
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs. Bioinform. 35 (17) (2019)
Jacopo Marchi, Ezequiel A. Galpern, Rocío Espada, Diego U. Ferreiro, Aleksandra M. Walczak, Thierry Mora
Size and structure of the sequence space of repeat proteins. PLoS Comput. Biol. 15 (8) (2019)
Christophe Gardella, Olivier Marre, Thierry Mora
Modeling the Correlated Activity of Neural Populations: A Review. Neural Comput. 31 (2) (2019)
Nicholas A. Rossi, Thierry Mora, Aleksandra M. Walczak, Mary J. Dunlop
Active degradation of MarA controls coordination of its downstream targets. PLoS Comput. Biol. 14 (12) (2018)
Ulisse Ferrari, Stéphane Deny, Olivier Marre, Thierry Mora
A Simple Model for Low Variability in Neural Spike Trains. Neural Comput. 30 (11) (2018)
Mikhail V. Pogorelyy, Yuval Elhanati, Quentin Marcou, Anastasiia L. Sycheva, Ekaterina Komech, Vadim I. Nazarov, Olga V. Britanova, Dmitry M. Chudakov, Ilgar Z. Mamedov, Yuri B. Lebedev, Thierry Mora, Aleksandra M. Walczak
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13 (7) (2017)
Christophe Gardella, Olivier Marre, Thierry Mora
Restricted Boltzmann Machines provide an accurate metric for retinal responses to visual stimuli. ICLR (Workshop) (2017)
Charles K. Fisher, Thierry Mora, Aleksandra M. Walczak
Variable habitat conditions drive species covariation in the human microbiota. PLoS Comput. Biol. 13 (4) (2017)
Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
Inferring repeat-protein energetics from evolutionary information. PLoS Comput. Biol. 13 (6) (2017)
Yuval Elhanati, Quentin Marcou, Thierry Mora, Aleksandra M. Walczak
repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data. Bioinform. 32 (13) (2016)
Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro
Capturing coevolutionary signals inrepeat proteins. BMC Bioinform. 16 (2015)
Olivier Marre, Vicente Botella-Soler, Kristina D. Simmons, Thierry Mora, Gasper Tkacik, Michael J. Berry II
High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. PLoS Comput. Biol. 11 (7) (2015)
Andrea Cavagna, Lorenzo Del Castello, Irene Giardina, Tomas Grigera, Asja Jelic, Stefania Melillo, Thierry Mora, Leonardo Parisi, Edmondo Silvestri, Massimiliano Viale, Aleksandra M. Walczak
Flocking and turning: a new model for self-organized collective motion. CoRR (2014)
Thierry Mora, Howard Yu, Yoshiyuki Sowa, Ned S. Wingreen
Steps in the Bacterial Flagellar Motor. PLoS Comput. Biol. 5 (10) (2009)
Hervé Daudé, Marc Mézard, Thierry Mora, Riccardo Zecchina
Pairs of SAT-assignments in random Boolean formulæ. Theor. Comput. Sci. 393 (1-3) (2008)
Thierry Mora, Lenka Zdeborová
Random subcubes as a toy model for constraint satisfaction problems CoRR (2007)
Thierry Mora, Marc Mézard
Geometrical organization of solutions to random linear Boolean equations CoRR (2006)
Thierry Mora, Olivier Rivoire
Statistical mechanics of error exponents for error-correcting codes CoRR (2006)
Thierry Mora, Olivier Rivoire
Error Exponents of Low-Density Parity-Check Codes on the Binary Erasure Channel CoRR (2006)
Hervé Daudé, Marc Mézard, Thierry Mora, Riccardo Zecchina
Pairs of SAT Assignment in Random Boolean Formulae CoRR (2005)
Marc Mézard, Thierry Mora, Riccardo Zecchina
Clustering of solutions in the random satisfiability problem CoRR (2005)