Peter G. Wolynes

Publication Activity (10 Years)

Years Active: 1992-2022
Publications (10 Years): 7

Top Topics

Protein Structure

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Carlos Bueno, James Liman, Nicholas P. Schafer, Margaret S. Cheung, Peter G. Wolynes
A generalized Flory-Stockmayer kinetic theory of connectivity percolation and rigidity percolation of cytoskeletal networks. PLoS Comput. Biol. 18 (5) (2022)
Xinyu Gu, Nicholas P. Schafer, Carlos Bueno, Wei Lu, Peter G. Wolynes
A structural dynamics model for how CPEB3 binding to SUMO2 can regulate translational control in dendritic spines. PLoS Comput. Biol. 18 (11) (2022)
Atilio O. Rausch, Maria I Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations. Bioinform. 37 (18) (2021)
Wei Lu, Carlos Bueno, Nicholas P. Schafer, Joshua Moller, Shikai Jin, Xun Chen, Mingchen Chen, Xinyu Gu, Aram Davtyan, Juan J. de Pablo, Peter G. Wolynes
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations. PLoS Comput. Biol. 17 (2) (2021)
Vinícius G. Contessoto, Ryan R. Cheng, Arya Hajitaheri, Esteban Dodero-Rojas, Matheus F. Mello, Erez Lieberman Aiden, Peter G. Wolynes, Michele Di Pierro, José N. Onuchic
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. Nucleic Acids Res. 49 (Database-Issue) (2021)
Shikai Jin, Vinícius G. Contessoto, Mingchen Chen, Nicholas P. Schafer, Wei Lu, Xun Chen, Carlos Bueno, Arya Hajitaheri, Brian J. Sirovetz, Aram Davtyan, Garegin A. Papoian, Min-Yeh Tsai, Peter G. Wolynes
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
R. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Michael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro
Protein frustratometer: a tool to localize energetic frustration in protein molecules. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Michael C. Prentiss, David J. Wales, Peter G. Wolynes
The Energy Landscape, Folding Pathways and the Kinetics of a Knotted Protein. PLoS Comput. Biol. 6 (7) (2010)
Diego U. Ferreiro, Aleksandra M. Walczak, Elizabeth A. Komives, Peter G. Wolynes
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures. PLoS Comput. Biol. 4 (5) (2008)
Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes
Folding funnels: The key to robust protein structure prediction. J. Comput. Chem. 23 (1) (2002)
Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes
Evaluating protein structure-prediction schemes using energy landscape theory. IBM J. Res. Dev. 45 (3) (2001)
Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes
A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition. HICSS (5) (1994)
J. Irwin, Henrik G. Bohr, K. Mochizuki, Peter G. Wolynes
Classification and Prediction of Protein Side-Chains by Neural Network Techniques. Int. J. Neural Syst. 3 (Supplement) (1992)