Zaida Luthey-Schulten

Publication Activity (10 Years)

Years Active: 1994-2021
Publications (10 Years): 5

Top Topics

Caenorhabditis Elegans

Stochastic Simulation

Saccharomyces Cerevisiae

Top Venues

IPDPS Workshops

PLoS Comput. Biol.

Parallel Comput.

Publications

Melih Sener, Stuart Levy, John E. Stone, A. J. Christensen, Barry Isralewitz, Robert Patterson, Kalina Borkiewicz, Jeffrey Carpenter, C. Neil Hunter, Zaida Luthey-Schulten, Donna J. Cox
Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales. Parallel Comput. 102 (2021)
Zhaleh Ghaemi, Joseph R. Peterson, Martin Gruebele, Zaida Luthey-Schulten
An in-silico human cell model reveals the influence of spatial organization on RNA splicing. PLoS Comput. Biol. 16 (3) (2020)
Piyush Labhsetwar, Marcelo C. R. Melo, John A. Cole, Zaida Luthey-Schulten
Population FBA predicts metabolic phenotypes in yeast. PLoS Comput. Biol. 13 (9) (2017)
Michael J. Hallock, Zaida Luthey-Schulten
Improving Reaction Kernel Performance in Lattice Microbes: Particle-Wise Propensities and Run-Time Generated Code. IPDPS Workshops (2016)
John E. Stone, Michael J. Hallock, James C. Phillips, Joseph R. Peterson, Zaida Luthey-Schulten, Klaus Schulten
Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads. IPDPS Workshops (2016)
John A. Cole, Lars Kohler, Jamila Hedhli, Zaida Luthey-Schulten
Spatially-resolved metabolic cooperativity within dense bacterial colonies. BMC Syst. Biol. 9 (2015)
Michael J. Hallock, John E. Stone, Elijah Roberts, Corey Fry, Zaida Luthey-Schulten
Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations. Parallel Comput. 40 (5-6) (2014)
Elijah Roberts, John E. Stone, Zaida Luthey-Schulten
Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation. J. Comput. Chem. 34 (3) (2013)
John Eargle, Zaida Luthey-Schulten
: 3D display and analysis of protein·RNA interaction networks. Bioinform. 28 (22) (2012)
Elijah Roberts, Andrew T. Magis, Julio O. Ortiz, Wolfgang Baumeister, Zaida Luthey-Schulten
Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study. PLoS Comput. Biol. 7 (3) (2011)
Elijah Roberts, John E. Stone, Leonardo Sepulveda, Wen-mei W. Hwu, Zaida Luthey-Schulten
Long time-scale simulations of in vivo diffusion using GPU hardware. IPDPS (2009)
John Eargle, Zaida Luthey-Schulten
Visualizing the dual space of biological molecules. Comput. Biol. Chem. 30 (3) (2006)
John Eargle, Dan Wright, Zaida Luthey-Schulten
of protein structures and sequences for VMD. Bioinform. 22 (4) (2006)
Elijah Roberts, John Eargle, Dan Wright, Zaida Luthey-Schulten
MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinform. 7 (2006)
Felix Autenrieth, Emad Tajkhorshid, Jérôme Baudry, Zaida Luthey-Schulten
Classical force field parameters for the heme prosthetic group of cytochrome c. J. Comput. Chem. 25 (13) (2004)
Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes
Folding funnels: The key to robust protein structure prediction. J. Comput. Chem. 23 (1) (2002)
Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes
Evaluating protein structure-prediction schemes using energy landscape theory. IBM J. Res. Dev. 45 (3) (2001)
Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes
A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition. HICSS (5) (1994)