Elijah Roberts

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 4

Top Topics

Nearest Neighbor

Diffusion Process

Stochastic Models

Top Venues

PLoS Comput. Biol.

J. Comput. Chem.

Publications

Lior I. Shachaf, Elijah Roberts, Patrick Cahan, Jie Xiao
Gene regulation network inference using k-nearest neighbor-based mutual information estimation: revisiting an old DREAM. BMC Bioinform. 24 (1) (2023)
Yuncong Geng, Christopher Herrick Bohrer, Nicolás Yehya, Hunter Hendrix, Lior I. Shachaf, Jian Liu, Jie Xiao, Elijah Roberts
A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation. PLoS Comput. Biol. 18 (9) (2022)
Kiara C. Eldred, Cameron M. Avelis, Robert J. Johnston Jr, Elijah Roberts
Modeling binary and graded cone cell fate patterning in the mouse retina. PLoS Comput. Biol. 16 (3) (2020)
Max Klein, Rati Sharma, Chris H. Bohrer, Cameron M. Avelis, Elijah Roberts
Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark. Bioinform. 33 (2) (2017)
Michael J. Hallock, John E. Stone, Elijah Roberts, Corey Fry, Zaida Luthey-Schulten
Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations. Parallel Comput. 40 (5-6) (2014)
Elijah Roberts, John E. Stone, Zaida Luthey-Schulten
Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation. J. Comput. Chem. 34 (3) (2013)
Elijah Roberts, Andrew T. Magis, Julio O. Ortiz, Wolfgang Baumeister, Zaida Luthey-Schulten
Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study. PLoS Comput. Biol. 7 (3) (2011)
Elijah Roberts, John E. Stone, Leonardo Sepulveda, Wen-mei W. Hwu, Zaida Luthey-Schulten
Long time-scale simulations of in vivo diffusion using GPU hardware. IPDPS (2009)
Elijah Roberts, John Eargle, Dan Wright, Zaida Luthey-Schulten
MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinform. 7 (2006)