Mark L. Blaxter

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 3

Top Topics

Phylogenetic Analysis

Genome Annotation

Complex Environments

Statistical Models

Top Venues

Database J. Biol. Databases Curation

PLoS Comput. Biol.

Publications

Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC Bioinform. 24 (1) (2023)
Dominik R. Laetsch, Mark L. Blaxter
BlobTools: Interrogation of genome assemblies. F1000Research 6 (2017)
Richard J. Challis, Sujai Kumar, Lewis Stevens, Mark L. Blaxter
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. Database J. Biol. Databases Curation 2017 (2017)
Marek Gierlinski, Christian Cole, Pietà Schofield, Nicholas J. Schurch, Alexander Sherstnev, Vijender Singh, Nicola Wrobel, Karim Gharbi, Gordon G. Simpson, Tom Owen-Hughes, Mark L. Blaxter, Geoffrey J. Barton
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinform. 31 (22) (2015)
Mick Watson, Marian Thomson, Judith E. Risse, Richard Talbot, Javier Santoyo-Lopez, Karim Gharbi, Mark L. Blaxter
poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinform. 31 (1) (2015)
Amir Szitenberg, Max John, Mark L. Blaxter, David H. Lunt
ReproPhylo: An Environment for Reproducible Phylogenomics. PLoS Comput. Biol. 11 (9) (2015)
Martin O. Jones, Mark L. Blaxter
afterParty: turning raw transcriptomes into permanent resources. BMC Bioinform. 14 (2013)
Ben Elsworth, Martin O. Jones, Mark L. Blaxter
Badger - an accessible genome exploration environment. Bioinform. 29 (21) (2013)
Sujai Kumar, Philipp H. Schiffer, Mark L. Blaxter
959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. Nucleic Acids Res. 40 (Database-Issue) (2012)
Martin O. Jones, Georgios D. Koutsovoulos, Mark L. Blaxter
iPhy: an integrated phylogenetic workbench for supermatrix analyses. BMC Bioinform. 12 (2011)
Suresh Swain, Jodie F. Wren, Stephen R. Stürzenbaum, Peter Kille, A. John Morgan, Tjalling Jager, Martijs J. Jonker, Peter K. Hankard, Claus Svendsen, Jenifer Owen, Ann Hedley, Mark L. Blaxter, David J. Spurgeon
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans. BMC Syst. Biol. 4 (2010)
Ralf Schmid, Mark L. Blaxter
annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinform. 9 (2008)
Alexie Papanicolaou, Steffi Gebauer-Jung, Mark L. Blaxter, W. Owen McMillan, Chris D. Jiggins
ButterflyBase: a platform for lepidopteran genomics. Nucleic Acids Res. 36 (Database-Issue) (2008)
Martin O. Jones, Mark L. Blaxter
TaxMan: a taxonomic database manager. BMC Bioinform. 7 (2006)
James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson, Mark L. Blaxter
Exploring Parasite Gene Space. BMC Bioinform. 6 (S-3) (2005)
James Wasmuth, Mark L. Blaxter
prot4EST: Translating Expressed Sequence Tags from neglected genomes. BMC Bioinform. 5 (2004)
John Parkinson, Claire Whitton, Ralf Schmid, Marian Thomson, Mark L. Blaxter
NEMBASE: a resource for parasitic nematode ESTs. Nucleic Acids Res. 32 (Database-Issue) (2004)
John Parkinson, Alasdair Anthony, James Wasmuth, Ralf Schmid, Ann Hedley, Mark L. Blaxter
PartiGene-constructing partial genomes. Bioinform. 20 (9) (2004)
John Parkinson, Mark L. Blaxter
SimiTri-visualizing similarity relationships for groups of sequences. Bioinform. 19 (3) (2003)
John Parkinson, David B. Guiliano, Mark L. Blaxter
Making sense of EST sequences by CLOBBing them. BMC Bioinform. 3 (2002)