John Parkinson

Publication Activity (10 Years)

Years Active: 1990-2024
Publications (10 Years): 5

Top Topics

Phase Contrast Microscopy

Signal Transduction

Automatic Annotation

General Purpose

Top Venues

PLoS Comput. Biol.

Database J. Biol. Databases Curation

Publications

Donny Chan, Graham L. Cromar, Billy Taj, John Parkinson
Cell4D: a general purpose spatial stochastic simulator for cellular pathways. BMC Bioinform. 25 (1) (2024)
Nirvana Nursimulu, Alan M. Moses, John Parkinson
Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation. PLoS Comput. Biol. 18 (9) (2022)
Cedoljub Bundalovic-Torma, Gregory B. Whitfield, Lindsey S. Marmont, P. Lynne Howell, John Parkinson
A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries. PLoS Comput. Biol. 16 (4) (2020)
Nirvana Nursimulu, Leon L. Xu, James D. Wasmuth, Ivan Krukov, John Parkinson
Improved enzyme annotation with EC-specific cutoffs using DETECT v2. Bioinform. 34 (19) (2018)
Graham L. Cromar, Anthony Zhao, Xuejian Xiong, Lakshmipuram S. Swapna, Noeleen Loughran, Hongyan Song, John Parkinson
PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya. Database J. Biol. Databases Curation 2016 (2016)
Graham L. Cromar, Anthony Zhao, Alex Yang, John Parkinson
Hyperscape: visualization for complex biological networks. Bioinform. 31 (20) (2015)
Henry C. M. Leung, Siu-Ming Yiu, John Parkinson, Francis Y. L. Chin
Assembler for Metatranscriptomic Data Generated from Next-Generation Sequencing Technology. J. Comput. Biol. 20 (7) (2013)
Anne L. Wheeler, Cátia M. Teixeira, Afra H. Wang, Xuejian Xiong, Natasa Kovacevic, Jason P. Lerch, Anthony Randal McIntosh, John Parkinson, Paul W. Frankland
Identification of a Functional Connectome for Long-Term Fear Memory in Mice. PLoS Comput. Biol. 9 (1) (2013)
Hongyan Song, John Parkinson
Modelling the Self-Assembly of Elastomeric Proteins Provides Insights into the Evolution of Their Domain Architectures. PLoS Comput. Biol. 8 (3) (2012)
Andrei L. Turinsky, Brian Turner, Rosanne C. Borja, James A. Gleeson, Michael Heath, Shuye Pu, Thomas Switzer, Dong Dong, Yunchen Gong, Tuan On, Xuejian Xiong, Andrew Emili, Jack Greenblatt, John Parkinson, Zhaolei Zhang, Shoshana J. Wodak
DAnCER: Disease-Annotated Chromatin Epigenetics Resource. Nucleic Acids Res. 39 (Database-Issue) (2011)
Xuejian Xiong, Hongyan Song, Tuan On, Lucas Lochovsky, Nicholas J. Provart, John Parkinson
PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya. Bioinform. 27 (6) (2011)
Stacy S. Hung, James Wasmuth, Christopher Sanford, John Parkinson
. Bioinform. 26 (14) (2010)
José M. Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson
. PLoS Comput. Biol. 5 (10) (2009)
Chong Su, José M. Peregrín-Alvarez, Gareth Butland, Sadhna Phanse, Vincent Fong, Andrew Emili, John Parkinson
. Nucleic Acids Res. 36 (Database-Issue) (2008)
David He, John Parkinson
SubSeqer: a graph-based approach for the detection and identification of repetitive elements in low-complexity sequences. Bioinform. 24 (7) (2008)
Gary Beauchamp, John Parkinson
Pupils' attitudes towards school science as they transfer from an ICT-rich primary school to a secondary school with fewer ICT resources: Does ICT matter? Educ. Inf. Technol. 13 (2) (2008)
Christopher Sanford, Matthew L. K. Yip, Carl White, John Parkinson
Cell++ - simulating biochemical pathways. Bioinform. 22 (23) (2006)
James Wasmuth, Ralf Schmid, Alasdair Anthony, John Parkinson, Mark L. Blaxter
Exploring Parasite Gene Space. BMC Bioinform. 6 (S-3) (2005)
José M. Peregrín-Alvarez, Andrew Yam, Gaya Sivakumar, John Parkinson
PartiGeneDB - collating partial genomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
John Parkinson
Mediating Science Learning Through Information and Communications Technology: Holliman, Richard and Scanlon, Eileen (Eds.) (2004) London: RoutledgeFalmer, 211pp, ISBN 0-415-32832-2. Comput. Educ. 43 (4) (2004)
John Parkinson, Claire Whitton, Ralf Schmid, Marian Thomson, Mark L. Blaxter
NEMBASE: a resource for parasitic nematode ESTs. Nucleic Acids Res. 32 (Database-Issue) (2004)
John Parkinson, Alasdair Anthony, James Wasmuth, Ralf Schmid, Ann Hedley, Mark L. Blaxter
PartiGene-constructing partial genomes. Bioinform. 20 (9) (2004)
John Parkinson, Mark L. Blaxter
SimiTri-visualizing similarity relationships for groups of sequences. Bioinform. 19 (3) (2003)
John Parkinson, David B. Guiliano, Mark L. Blaxter
Making sense of EST sequences by CLOBBing them. BMC Bioinform. 3 (2002)
Steve Kennewell, Howard Tanner, John Parkinson
A model for the study and design of teaching situations with ICT. Communications and Networking in Education (1999)
John Parkinson
Making CASE Work. CAiSE (1990)