Alan M. Moses

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 14

Top Topics

Protein Complexes

Microscopy Images

Transfer Learning

Feature Representations

Top Venues

PLoS Comput. Biol.

Publications

Nirvana Nursimulu, Alan M. Moses, John Parkinson
Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation. PLoS Comput. Biol. 18 (9) (2022)
Alex X. Lu, Amy X. Lu, Iva Pritisanac, Taraneh Zarin, Julie D. Forman-Kay, Alan M. Moses
Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning. PLoS Comput. Biol. 18 (6) (2022)
Stanley Bryan Z. Hua, Alex X. Lu, Alan M. Moses
CytoImageNet: A large-scale pretraining dataset for bioimage transfer learning. CoRR (2021)
Tianyu Lu, Alex X. Lu, Alan M. Moses
Random Embeddings and Linear Regression can Predict Protein Function. CoRR (2021)
Rohit Saha, Abenezer Teklemariam, Ian Shenyen Hsu, Alan M. Moses
W-Cell-Net: Multi-frame Interpolation of Cellular Microscopy Videos. CoRR (2020)
Amy X. Lu, Alex X. Lu, Alan M. Moses
Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning. CoRR (2020)
Alex X. Lu, Taraneh Zarin, Ian Shenyen Hsu, Alan M. Moses
YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells. Bioinform. 35 (21) (2019)
Alex X. Lu, Amy X. Lu, Wiebke Schormann, David W. Andrews, Alan M. Moses
The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers. CoRR (2019)
Iva Pritisanac, Robert M. Vernon, Alan M. Moses, Julie D. Forman-Kay
Entropy and Information within Intrinsically Disordered Protein Regions. Entropy 21 (7) (2019)
Tahmid F. Mehdi, Gurdeep Singh, Jennifer A Mitchell, Alan M. Moses
Variational infinite heterogeneous mixture model for semi-supervised clustering of heart enhancers. Bioinform. 35 (18) (2019)
Alex X. Lu, Oren Z. Kraus, Sam Cooper, Alan M. Moses
Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting. PLoS Comput. Biol. 15 (9) (2019)
Alex X. Lu, Amy X. Lu, Wiebke Schormann, Marzyeh Ghassemi, David W. Andrews, Alan M. Moses
The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers. NeurIPS (2019)
Bob Strome, Ian Shenyen Hsu, Mitchell Li Cheong Man, Taraneh Zarin, Alex N. Nguyen Ba, Alan M. Moses
Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity. BMC Syst. Biol. 12 (1) (2018)
Muluye E. Liku, Elizabeth-Ann Legere, Alan M. Moses
NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals. BMC Bioinform. 19 (1) (2018)
Louis-François Handfield, Bob Strome, Yolanda T. Chong, Alan M. Moses
Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images. Bioinform. 31 (6) (2015)
Alex N. Nguyen Ba, Bob Strome, Jun Jie Hua, Jonathan Desmond, Isabelle Gagnon-Arsenault, Eric L. Weiss, Christian R. Landry, Alan M. Moses
Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences. PLoS Comput. Biol. 10 (12) (2014)
Louis-François Handfield, Yolanda T. Chong, Jibril Simmons, Brenda J. Andrews, Alan M. Moses
Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins. PLoS Comput. Biol. 9 (6) (2013)
Andy C. W. Lai, Alex N. Nguyen Ba, Alan M. Moses
Predicting kinase substrates using conservation of local motif density. Bioinform. 28 (7) (2012)
Amin Zia, Alan M. Moses
Towards a theoretical understanding of false positives in DNA motif finding. BMC Bioinform. 13 (2012)
Amin Zia, Alan M. Moses
Ranking insertion, deletion and nonsense mutations based on their effect on genetic information. BMC Bioinform. 12 (2011)
Christos Josephides, Alan M. Moses
Modeling the evolution of a classic genetic switch. BMC Syst. Biol. 5 (2011)
Alex N. Nguyen Ba, Anastassia Pogoutse, Nicholas Provart, Alan M. Moses
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinform. 10 (2009)
Alan M. Moses, Daniel A. Pollard, David A. Nix, Venky N. Iyer, Xiaoyong Li, Mark D. Biggin, Michael B. Eisen
. PLoS Comput. Biol. 2 (10) (2006)
Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, Michael B. Eisen
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments. BMC Bioinform. 7 (2006)
Alan M. Moses, Derek Y. Chiang, Michael B. Eisen
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures. Pacific Symposium on Biocomputing (2004)
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts. RECOMB (2003)