Shane A. McCarthy

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 7

Top Topics

Lossy Compression

Reconstructed Image Quality

Genome Annotation

Nearest Neighbor

Top Venues

Publications

Chenxi Zhou, Shane A. McCarthy, Richard Durbin
YaHS: yet another Hi-C scaffolding tool. Bioinform. 39 (1) (2023)
Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Mark L. Blaxter, Nova Mieszkowska, Neil Hall, Peter Holland, Richard Durbin, Thomas Richards, Paul J. Kersey, Peter Hollingsworth, Willie Wilson, Alex Twyford, Ester Gaya, Mara Lawniczak, Owen Lewis, Gavin Broad, Fergal Martin, Michelle Hart, Ian Barnes, Giulio Formenti, Linelle Abueg, James W. Torrance, Eugene W. Myers, Shane A. McCarthy
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC Bioinform. 24 (1) (2023)
Dengfeng Guan, Shane A. McCarthy, Zemin Ning, Guohua Wang, Yadong Wang, Richard Durbin
Efficient iterative Hi-C scaffolder based on N-best neighbors. BMC Bioinform. 22 (1) (2021)
Dengfeng Guan, Shane A. McCarthy, Zemin Ning, Guohua Wang, Yadong Wang, Richard Durbin
Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors. BMC Bioinform. 22 (1) (2021)
Dengfeng Guan, Shane A. McCarthy, Jonathan Wood, Kerstin Howe, Yadong Wang, Richard Durbin
Identifying and removing haplotypic duplication in primary genome assemblies. Bioinform. 36 (9) (2020)
James K. Bonfield, Shane A. McCarthy, Richard Durbin
Crumble: reference free lossy compression of sequence quality values. Bioinform. 35 (2) (2019)
Petr Danecek, Shane A. McCarthy
BCFtools/csq: haplotype-aware variant consequences. Bioinform. 33 (13) (2017)